BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487926
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10960.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2032 0.0
> AT5G10960.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:3464218-3465687 FORWARD
LENGTH=1356
Length=1356
Score = 2032 bits (1100), Expect = 0.0
Identities = 1284/1367 (94%), Gaps = 36/1367 (3%)
Strand=Plus/Plus
Query 1 TTTATCACTTCATCGTCTCCAAAAAG-CTTAACCACTTGAAACCTCTCTCTCTGGTTGAC 59
|||||||||||||| ||||| |||| | | |||||||||||||||||||||||||||||
Sbjct 1 TTTATCACTTCATCTTCTCC--AAAGCCAT-ACCACTTGAAACCTCTCTCTCTGGTTGAC 57
Query 60 CCGATAATTTCTCTCTCGTAGACGCACAGATCTCTCTTCAAATCTGCTAGATCTGTTCGT 119
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 58 CCGATAATTTCTCTCTCGCAGACGCACAGATCTCTCTTCGAATCTGCTAGATCTGTTCCT 117
Query 120 TTTCTTACATCTGTATTGCGAAACCTCAGATCGGAAGGTTTCGTTTACAGATCTAGCGAT 179
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 118 TTTCTTACATCTGTATTGCGAAACCTCTGATCGGAAGGTTTCGTTTACAGATCT----A- 172
Query 180 TCTCCGTTACAAGTTTCGTTGTATTTCCGAGTTCCGACGTATGCTTTGTTTTCAGATCTG 239
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 173 ---CCGATACGAGTTTCGCAGTATTTCCGAGTTCCGACGTATGCTTTGTTTTCAGATCTG 229
Query 240 GGTTTGTTGTATCTCTAGAAATGGCGGAGACTTTGAAAGAAGATTCGATTATGATTCGAG 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GGTTTGTTGTATATCTAGAAATGGCGGAGACTTTGAAAGAAGATTCGATTATGATTCGAG 289
Query 300 AGGTTTGGGATTACAATTTGGTTGAAGAATTCGCGTTGATCCGTGAAATCGTTGACAAAT 359
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 290 AGGTTTGGGATTACAATTTGGTTGAAGAATTCGCGTTGATCCGTGAGATTGTTGACAAAT 349
Query 360 TCAGCTATATCGCTATGGATACTGAGTTTCCAGGTGTGGTTTTGAAGCCTGTTGCTACTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 TCAGCTATATCGCTATGGATACTGAGTTTCCAGGTGTGGTTTTGAAGCCTGTTGCTACTT 409
Query 420 TTAAGTACAATAACGATCTTAACTATAGGACTCTCAAGGAAAATGTTGATTTGTTGAAAT 479
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 410 TCAAGTACAATAACGATCTTAACTACAGGACTCTCAAGGAAAATGTCGATTTGTTGAAAT 469
Query 480 TGATTCAAGTTGGTTTAACGTTTTCTGATGAGAATGGGAATCTTCCCACTTGTGGGACGG 539
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 470 TGATTCAAGTTGGGTTAACTTTTTCTGATGAGAATGGGAATCTTCCGACTTGTGGGACGG 529
Query 540 ATAAGTTCTGCATCTGGCAGTTCAATTTCCGTGAGTTCAATATCGGTGAGGATATCTACG 599
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 530 ATAAGTTCTGCATCTGGCAATTCAATTTCCGTGAGTTCAACATCGGTGAGGATATCTACG 589
Query 600 CAAGTGAGTCGATTGAGCTGTTGCGTCAGTGTGGGATTGATTTCAAGAAGAACATTGAGA 659
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 CGAGTGAGTCTATTGAGCTGTTGCGTCAGTGTGGGATTGATTTCAAGAAGAACATTGAGA 649
Query 660 AAGGTATTGATGTGGTTAGGTTTGGTGAGCTTATGATGTCGTCTGGGATTGTTTTGAACG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAGGTATTGATGTGGTTAGGTTTGGTGAGCTTATGATGTCGTCTGGGATTGTTTTGAACG 709
Query 720 ATGCTATCTCTTGGGTTACGTTCCATGGAGGATATGATTTCGGGTATTTGGTTAAACTGT 779
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 710 ATGCTATCTCGTGGGTTACGTTCCATGGTGGATATGATTTCGGGTATTTGGTTAAGTTGT 769
Query 780 TGACTTGCAAGGAATTGCCCCTCAAGCAAGCTGATTTCTTCAAGCTTCTGTATGTGTATT 839
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TGACTTGTAAGGAATTGCCTCTCAAGCAAGCTGATTTCTTCAAGCTTCTGTATGTGTATT 829
Query 840 TCCCTACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGACTGTTTGGCGGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 830 TCCCTACGGTTTACGATATCAAGCACTTGATGACGTTCTGCAACGGACTGTTTGGTGGAT 889
Query 900 TGAACAGACTCGCCGAGCTTATGGGTGTGGAAAGAGTAGGGATCTGTCATCAAGCTGGGT 959
|||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||
Sbjct 890 TGAACAGACTTGCGGAGCTTATGGGAGTGGAGAGAGTTGGGATTTGTCATCAAGCTGGGT 949
Query 960 CAGATAGCTTGCTCACCTTAGGCTCGTTTAGGAAGCTCAAGGAACGTTATTTCCCGGGAT 1019
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 950 CGGATAGCTTGCTCACCTTAGGGTCGTTTAGGAAGCTCAAGGAACGTTATTTCCCGGGAT 1009
Query 1020 CAACTGAGAAATACACTGGAGTCTTGTATGGTCTAGGTGTGGAAGATGGTACTACTACT- 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CAACTGAGAAATACACTGGAGTCTTGTATGGTCTAGGTGTGGAAGATGGTACTACTACTA 1069
Query 1079 --GTTGCTAATTAAGAAGAAAG-A-T-A------CTT-GAAAATTCCAGGGAACTGCAAT 1126
|||||||||||||||||||| | | | ||| ||||||||||||||| ||| ||
Sbjct 1070 CTGTTGCTAATTAAGAAGAAAGGAATGAAAGATACTTTGAAAATTCCAGGGAAGTGCGAT 1129
Query 1127 TAGAT-T-TTTCTTTAGACTTTGTGAGTGTGAGA---CCAAT-TAGAATTGTCTTTGTGT 1180
||||| | ||||||||| |||||||||||||||| |||| |||||| ||| ||||||
Sbjct 1130 TAGATATATTTCTTTAGTCTTTGTGAGTGTGAGAAGACCAAAATAGAATCGTCGTTGTGT 1189
Query 1181 AAATTGGCAAATTTGGTGT-AGTAAGTGACTTGTTGTGTCTTTGTTGCTGTTGTTTTCAG 1239
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1190 AAATTGGCAAATT-GGTGTTAGTAAGTGACTTGTTGTGTCTTTGTTGCT-TTGTTTTCAG 1247
Query 1240 GAAAACCCCTTCTGATCAAAAAA-GAGGGGTTTTTGTTTTTAGCTTGAGTTTCTGAATGT 1298
||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1248 GAAAACCCCTTGTGATCAAAATTTGAGGGGTTTTTGTTTT-AGCTTGAGTTTCTGAATGT 1306
Query 1299 ATATCAATTCAGCTACCCGTTTATTTAATAAATAATCTCCAATTTTA 1345
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1307 ATATCAATTCAGCTACCCGTTTATTTAATAAATAATCTCCAATTTTA 1353
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5