BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487928
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:34... 832 0.0
AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28... 466 1e-130
AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to ... 104 1e-21
> AT5G10980.1 | Symbols: | Histone superfamily protein | chr5:3472405-3473466
REVERSE LENGTH=714
Length=714
Score = 832 bits (450), Expect = 0.0
Identities = 522/555 (94%), Gaps = 11/555 (2%)
Strand=Plus/Plus
Query 1 ACAATCATCAAGAAAACAAAACTCGCTTTTTGATAAACAAATC-GAA---TC-CTCTCAA 55
|||||||||||||||||||||||||||| |||||| |||||| || || || ||||
Sbjct 24 ACAATCATCAAGAAAACAAAACTCGCTTCCTGATAATCAAATCAAAAGCTTCTCTATCAA 83
Query 56 GCTTTTCGAAAAGTCACATC-TCT-G-AGAAGACAATGGCTCGTACCAAGCAAACCGCTA 112
|||| ||||||||||||||| | | | |||| ||||||||||||||||||||||||||||
Sbjct 84 GCTTATCGAAAAGTCACATCTTTTGGAAGAA-ACAATGGCTCGTACCAAGCAAACCGCTA 142
Query 113 GGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAGCTCGCCACCAAGGCGGCGAGGAAAT 172
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 143 GGAAATCCACCGGAGGTAAAGCTCCCAGGAAGCAGCTTGCCACCAAGGCGGCGAGGAAAT 202
Query 173 CTGCACCGACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCCGGAACCGTGGCTC 232
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 203 CAGCACCAACCACCGGAGGAGTCAAGAAGCCTCACCGTTACCGTCCAGGAACCGTCGCTC 262
Query 233 TTCGTGAGATTCGTAAATACCAGAAGAGCACTGAATTATTGATCCGCAAGCTTCCCTTCC 292
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 263 TTCGTGAGATTCGTAAGTACCAGAAGAGTACTGAATTGTTGATCCGCAAGCTTCCCTTCC 322
Query 293 AGCGTCTCGTTCGTGAAATCGCTCAGGACTTCAAGACGGATCTGAGGTTTCAGAGTCACG 352
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 323 AGCGTCTCGTTCGGGAAATAGCTCAGGACTTCAAGACGGATCTGAGGTTTCAGAGTCACG 382
Query 353 CGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTTGTTGGACTTTTCGAGGATACCA 412
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 383 CGGTGTTAGCTCTTCAAGAGGCGGCTGAGGCATACCTAGTTGGACTTTTCGAGGATACTA 442
Query 413 ATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ATCTCTGCGCTATTCACGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTA 502
Query 473 GAAGGATTCGTGGAGAACGTGCTTAAGCtttt-tttACCTAATTCGA-TTTAGATTTTTA 530
|||| ||||||||||||||||||||||||||| |||||||||||| | ||||||||||||
Sbjct 503 GAAGAATTCGTGGAGAACGTGCTTAAGCTTTTATTTACCTAATTCAAGTTTAGATTTTTA 562
Query 531 CGTTGATGTATTAGT 545
|| ||||||||||||
Sbjct 563 CGATGATGTATTAGT 577
> AT1G75600.1 | Symbols: | Histone superfamily protein | chr1:28390665-28391493
FORWARD LENGTH=531
Length=531
Score = 466 bits (252), Expect = 1e-130
Identities = 372/429 (87%), Gaps = 11/429 (3%)
Strand=Plus/Plus
Query 74 TCTCTGA-GAAGACAATGGCTCGTACCAAGCAAACCGCTAGGAAATCCAC-CGGAGGTAA 131
||| ||| |||| ||||||||||||| |||||||| || || |||| ||| |||||| ||
Sbjct 76 TCT-TGACGAAG-CAATGGCTCGTACGAAGCAAACTGCAAGAAAAT-CACACGGAGGAAA 132
Query 132 AGCTCCCAGGAAGCAGCTCGCCACCAAGGCGGCGAGGAAATCTGCACCGACCACCGGAGG 191
|||||| |||| | |||||| ||||||||||||||||||||||| ||||| || |||||
Sbjct 133 AGCTCCGAGGACTCTGCTCGCTACCAAGGCGGCGAGGAAATCTGCGCCGACTACTGGAGG 192
Query 192 AGTCAAGAAGCCTCACCGTTACCGTCCCGGAACCGTGGCTCTTCGTGAGATTCGTAAATA 251
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 193 AGTCAAGAAACCTCACCGTTACCGTCCCGGAACCGTCGCTCTTCGTGAGATTCGTAAATA 252
Query 252 CCAGAAGAGCACTGAATTATTGATCCGCAAGCTTCCCTTCCAGCGTCTCGTTCGTGAAAT 311
|||||||||||| || || |||||||| || ||||| || || ||||| |||||||||||
Sbjct 253 CCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAACGTCTTGTTCGTGAAAT 312
Query 312 CGCTCAGGACTT-CAAGACGGATCTGAGGTTTCAGAGTCACGCGGTGTTAGCTCTTCAAG 370
|||||| || || ||||||||||||||| || ||||| || |||||||||||||||||||
Sbjct 313 CGCTCAAGA-TTACAAGACGGATCTGAGATTCCAGAGCCATGCGGTGTTAGCTCTTCAAG 371
Query 371 AGGCGGCTGAGGCATACCTTG-TTGGACT-TTTCGAGGATACCAATCTCTGCGCTATTCA 428
| || ||||| ||||| ||| |||| | ||| || ||||| ||||| || || |||||
Sbjct 372 AAGCTGCTGAAGCATAT-TTGGTTGGTTTGTTT-GAAGATACAAATCTGTGTGCCATTCA 429
Query 429 CGCCAAGAGGGTTACGATCATGCCTAAGGACATTCAATTGGCTAGAAGGATTCGTGGAGA 488
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 430 TGCCAAGAGGGTTACGATCATGCCTAAAGATGTTCAATTGGCAAGAAGGATTCGTGGAGA 489
Query 489 ACGTGCTTA 497
||||||||
Sbjct 490 GCGTGCTTA 498
> AT1G75610.1 | Symbols: | pseudogene, histone H3, identical to
histone H3.2 from Medicago sativa GB:AAB36495 GI:488571, Histone
H3.2, minor Lolium temulentum SP|P11105, histone H3 Tortula
ruralis GI:4574208; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4; blastp match of 96% identity and 6.6e-54
P-value to GP|6006364|dbj|BAA84794.1||AP000559 EST D15300(C0425)
corresponds to a region of the predicted gene.~Similar
to histone H3 (AB015760) {Oryza sativa (japonica cultivar-group)}
| chr1:28392729-28393312 FORWARD LENGTH=584
Length=584
Score = 104 bits (56), Expect = 1e-21
Identities = 80/92 (87%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 236 GTGAGATTCGTAAATACCAGAAGAGCACTGAATTATTGATCCGCAAGCTTCCCTTCCAGC 295
|||||||||||||||||||||||||||| || || |||||||| || ||||| || || |
Sbjct 223 GTGAGATTCGTAAATACCAGAAGAGCACAGAGTTGTTGATCCGTAAACTTCCTTTTCAAC 282
Query 296 GTCTCGTTCGTGAAATCGCTCAGGACTTCAAG 327
|||| |||||||||||||| || || ||||||
Sbjct 283 GTCTTGTTCGTGAAATCGCCCAAGATTTCAAG 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5