BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487931
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11010.2 | Symbols: | Pre-mRNA cleavage complex II protein ... 2023 0.0
> AT5G11010.2 | Symbols: | Pre-mRNA cleavage complex II protein
family | chr5:3483704-3486267 FORWARD LENGTH=1489
Length=1489
Score = 2023 bits (1095), Expect = 0.0
Identities = 1208/1262 (96%), Gaps = 9/1262 (1%)
Strand=Plus/Plus
Query 1 ATACCTTCTCCTCTGGTCGACGACTCCAAAATCGCCGGTTATAGTTTCTTC-TCCGA-CG 58
|||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||
Sbjct 65 ATACCTTCTCCTCTGGTCGACGACTCAAAAATCGCCGGTTATAGTTTTTTCTTCCGACCG 124
Query 59 TCTTCTAATTTCGCCACTCTCCGTGTTATTTATCAAAGAAAGAGAAGGTGTGGCTGCAAT 118
| ||||| ||||| || | ||||||||||||| |||||||||| ||||||||||||||||
Sbjct 125 TTTTCTAGTTTCGTCATTTTCCGTGTTATTTAACAAAGAAAGATAAGGTGTGGCTGCAAT 184
Query 119 GTCTGAAGCAGAAAAGAAACTGCCTTTCATACCAGAGGAATGGTCGAATGCAGCAAGTTC 178
||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 185 GTCTGAAGCAGAAAATAAATTGCCTTTCATACCAGAGGAATGGTCAAATGCAGCAAGTTC 244
Query 179 TGTTTCCAGCAGTTCGTTGCAACCGGTTATAGCTTTGGTCTGTGGCCCTAAAAACAGTGG 238
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 TGTTTCCTGCAGTTCGTTGCAACCGGTTATAGCTTTGGTCTGTGGCCCTAAAAACAGTGG 304
Query 239 CAAAAGCACATTTTCACGCAATCTTGTTGAAGTTCTTCTCCAAAGATACAAAAGGGTTGC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 CAAAAGCACATTTTCACGCAATCTTGTTGAAGTTCTTCTCCAAAGATACAAAAGGGTTGC 364
Query 299 TTATTTGGATACTGATGTTGGCCAGCCTGAATTTACTGCACCTGGTTTTCTTTCTCTCAC 358
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 365 TTATTTGGATACTGATGTTGGCCAGCCTGAATTTACTGCACCTGGTTTCCTTTCTCTCAC 424
Query 359 TGTTGTTGATAGATCAATTCTAGAATCGGATTGGACAGTTCCATGCGTAAAGACACCAGA 418
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 425 AATTGTTGATAAATCAATTCTAGAATCGGATTGGACAGTTCCATGTGTAAAGACACCAGA 484
Query 419 GAGATGCTTCTTCTATGGTGATGTTTCTTCAAAGAGGGATCCAAAGGCATATTTAAGATA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GAGATGCTTCTTCTATGGTGATGTTTCTTCAAAGAGGGATCCAAAGGCATATTTAAGATA 544
Query 479 TGTATATACCTTATTCGATTACTATCAGCTACACTTCTGCAAGTCTAGCGAGAACAAAAC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 TGTATATACCTTATTCGATTACTATCAGCTACACTTCTGCAAGTCTAGCGAGAACAAAAC 604
Query 539 TGAACTGCCGCTTGTCATTAATACACCAGGATGGGTTAAAGGAATTGGCTATGAGTTATT 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGAATTGCCGCTTGTCATTAATACACCAGGATGGGTTAAAGGAATTGGCTATGAGTTATT 664
Query 599 GGTGGACGTACTGAGATATGTTTCTCCTTCCCACGTTGTGAAAATCAACATCTCTGCTTA 658
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 665 GGTGGACGTGCTGAGATATGTTTCCCCTTCCCACGTTGTGAAAATTAACATCTCTGCTTA 724
Query 659 CAACAAGAATCTACCAGCTGGGTTGTTCTGGTTAGACGGTAATGATGATGAGACAGCTCA 718
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CAACAAGAACCTACCAGCTGGGTTGTTCTGGTTAGACGGTAATGATGATGAGACAGCTCA 784
Query 719 TTTGATAGAGATTCAATCTGCTTACCAAGACAGATATAATCAATCCATTTTAATACATAA 778
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 TTTGATAGAGATCCAATCTGCTTACCAAGACAGATATAATCAATCCATTTTAATACATAA 844
Query 779 GGATGCTCGTTTGATGAGGGACATGCGTATAATTGCATACTTCAGGCAATGCATTAAAGG 838
||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||
Sbjct 845 GGATGCTCGTTTGATGAGGGACATGCGTATAATCGCCTACTTTAGGCAATGCTTTAAAGG 904
Query 839 AAAAGAAGTAAACACGATCAAAGAACTAACCCATGAACTCGCTTCCCACACTCCTTATGA 898
|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||
Sbjct 905 AAAAGAAGTAAACACGATCAAAGAACTAACACATGAACTCGCTTCCCATATTCCTTATGA 964
Query 899 AGTTCCAATATCAAGTTTAACAATCAATCATCTCCATTGTCAGATCCCAAGTTCTGAAGT 958
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 965 AGTTCCAATATCGAGTTTAACAATCAACCATCTCCATTGTCAGATCCCAAGTTCTGAAGT 1024
Query 959 GTTTTATAGTTTGAATGCTTCCATTGTTGGTTTGGGCGTTAGCAACGACGTGTTTGAAGA 1018
|| |||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||
Sbjct 1025 GTATTATAGTTTGAATGCTTCCATTGTTGGTTTGGGCATTAGCACCGAGGTGTTTGAGGA 1084
Query 1019 TTTGCCATCATGTGTAGGTCTTGGAATCGTGAGGGGTATTGACACAGAGAGAGGAATATT 1078
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TTTGCCATCATGCGTAGGTCTTGGAATCGTGAGGGGTATTGACACAGAGAGAGGAATATT 1144
Query 1079 ATACGTGATCACTCCAGTTCCAGAAAACGTAGTTGAGGAAGTTGATCTTCTATTGCAAGG 1138
||| |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1145 ATATGTGATCACTCCAGTACCAGAAAACTTAGTTGAGAAAGTTGATCTTCTATTGCAAGG 1204
Query 1139 CTATATTCAGTTACCTACTTGCCTCTTAGAGGTGAAGGATTACAGGT-GTCCATATTTAT 1197
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1205 CTATATTCAGTTACCTACTTGCCTCTTAGAGGTGAAGGATTACAGGTCG-CCATATTTAT 1263
Query 1198 CTGCCAACGTCTTAGCTTCCACCTAGATTTTGTTCTTGGAAGACATTTTTGCTCAGTTTT 1257
|||||||||||||||||||||||| ||||| || || ||||||||||||||||||| |
Sbjct 1264 CTGCCAACGTCTTAGCTTCCACCT-GATTTC-TT-TT--AAGACATTTTTGCTCAGTTCT 1318
Query 1258 TC 1259
||
Sbjct 1319 TC 1320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61897271985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5