BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487937
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64 |... 2098 0.0
> AT5G11050.1 | Symbols: MYB64, AtMYB64 | myb domain protein 64
| chr5:3502092-3503834 FORWARD LENGTH=1523
Length=1523
Score = 2098 bits (1136), Expect = 0.0
Identities = 1418/1546 (92%), Gaps = 52/1546 (3%)
Strand=Plus/Plus
Query 1 GCTCTCGGCTCACCTCCCCATTCTACACTAAACTTTTTCTCCTTTTTCCTCCATGGAAGA 60
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 GCTCTCGTCTCACCTCCCCATTCTACACTAAACTTTTTCTCCTTTTTCTTCCATGGAAGA 60
Query 61 ACAGAGAATACAAGAGAAGAGCTTCGCCCACGGCGCTGCACCGCCGTTGACAGCGGTTGA 120
||||| ||| |||||||||||| |||| |||||||||||||| |||||||| ||||||||
Sbjct 61 ACAGAAAATTCAAGAGAAGAGCCTCGCTCACGGCGCTGCACCACCGTTGACGGCGGTTGA 120
Query 121 GAGATTCTTGAACGGCCaaaaaaaTGATA-CCTTGTGCTTCAAGAAACAAGAGCGTTCTG 179
||||||||||||||||||||| || || | |||||||||||||||||||||| ||||||
Sbjct 121 GAGATTCTTGAACGGCCAAAAGAACGA-AGCCTTGTGCTTCAAGAAACAAGAACGTTCTA 179
Query 180 TAGACCGACCGATATTGAAGACGACAAGGGCGATTGAGATTAGAAATGACAACAAAGAGA 239
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 180 TAGACCGACCGATCGTGAAGACGACAAGGGCGATTGAGATTAGAAATGAAAACAAAGAGA 239
Query 240 ACATGATGTTTGGTCCGAGGAAGGAGAAAATA-TTGGCCGTTATTGGAGAAATGGTCGTT 298
|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 240 ACATGATGTTTGGTCCGAGGAAGGAGAAAA-ACTTGGCCGTTATTGGAGAAATCGTCGTT 298
Query 299 AAAGGTGCAGCTAAAG-----A-TTGCAAGGAAATAACAAAGAAACGACCATCCAAGAAT 352
|||||||||||||||| | ||||||||| ||||||||||| | ||||| |||||||
Sbjct 299 AAAGGTGCAGCTAAAGATTATACTTGCAAGGATATAACAAAGAAGCAACCATACAAGAAT 358
Query 353 CTCATCAAAGGGCAATGGACAGCCGAAGAAGACAGGAAGTTGATAAAGTTGGTGATGCAA 412
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 359 ATCATCAAAGGGCAATGGACAGCCGATGAAGACAGGAAGTTGATAAAGTTGGTGATGCAA 418
Query 413 CATGGAGAGAGGAAATGGGCAGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CATGGAGAGAGGAAATGGGCAGTAATCTCGGAGAAGCTTGAGGGAAGAGCAGGCAAGCAA 478
Query 473 TGTCGTGAGAGATGGCACAATCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAA 532
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTCGTGAGAGATGGCATAATCATCTCCGTCCTGATATCAAGAAAGATAGTTGGAGTGAA 538
Query 533 GAAGAAGAGAGTCTTCTTGTGGAAGCACACACCAGAATCGGTAATAAGTGGGCAGAGATC 592
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 GAAGAAGAGAGACTTCTTGTGGAAGCACACACCAGAATCGGGAATAAGTGGGCAGAGATC 598
Query 593 GCTAAACTCATACAAGGACGAACCGAAAACTCGATCAAGAACCATTGGAATGCGACGAAA 652
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 GCTAAACTCATACAAGGGCGAACCGAAAACTCGATCAAGAACCATTGGAATGCGACAAAA 658
Query 653 CGTCGCCAAAACTCCAAACGCAAACATAAGCGTTCAAAAAACGCGGATAATAACAGCGAT 712
|| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 CGACGCCAAAACTCAAAACGCAAACATAAGCGTTCAAAAAACGCGGATAGTAACAGCGAT 718
Query 713 ATAGATGATCTCTCTCCATCCGCTAAAAGGCCGTGCATTCTAGAAAACTATATTAGAAGA 772
|| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||| || |
Sbjct 719 ATTGATGATCTCTCTCCATCCGCTAAAAGGCCGCGCATTCTCGAAGACTATATTAAAA-A 777
Query 773 -ATCGAGAGTAATGACAAGGACAATAGCGAGAACATCATGACGACTACTAGTGGTAATCA 831
||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| ||
Sbjct 778 CATCGAGAATAATGACAAGAACAATGGCGAGAACATCATGAC---TACTAGTGGTAA-CA 833
Query 832 -TGTTCTTTCTACTTCGAATCT-TGATCAGATT-AATTCCGAAGACTCTACATCGTCTCT 888
||||||||| ||||||||| | ||||||| || ||||| ||||||||||||||||| ||
Sbjct 834 ATGTTCTTTCGACTTCGAAT-TATGATCAG-TTCAATTCTGAAGACTCTACATCGTCACT 891
Query 889 TTTGGATGATCCTTATGACGAAGAGCTTGTTTTCCTGAAAAATATCTTTGCGAACCACCC 948
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 892 CTTGGATGATCCTTATGACGAAGAGCTTGTTTTCCTGAAAAATATCTTTGAGAACCA--- 948
Query 949 AGTTTCTCTCGAGAACATCAACCTGAGCCAAGGTATGGATGAGATAACCCAGTCTTCTTC 1008
|| | |||||||||||||| |||||||||||| ||| || ||||||||||||||||
Sbjct 949 --TT-CGCTCGAGAACATCAATTTGAGCCAAGGTACGGA-GA--TAACCCAGTCTTCTTC 1002
Query 1009 ATCTGGGTTCATGATCGAGAACCCTAACCCTAAACCTAACTTGTACAACAATA-TTTTCG 1067
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |
Sbjct 1003 ATCTGGGTTTATGATCGAGAACCCTAAACCTAAACCTAACTTGTACAACAATACTTTT-G 1061
Query 1068 GAA-ATCATCTTGGAGCAATGGTCACAGAACCTTCGAATACTTCCCACCTCGCATCTGAT 1126
||| | ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 1062 GAACA-CATCTTGGAGCAATGGTCACAGAACCTGCCAATTCTTCCCACCTCGCATCTGAT 1120
Query 1127 ATCTACCTATCTGATTTGTTGAATGGTACGGCGTCGTCTTCTTCTTCATTTTCTTTTCTG 1186
|||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 1121 ATCTACTTATCTGATTTGTTGAACGGTACGGCGTCGTCTTCTTCTTCACTTACTTTTCTG 1180
Query 1187 TCTTCCAACAACAATGAGCAAGCCGGTGAAAACGAGTTGCTTTTGCCCCAAGCTAACTCC 1246
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TCTTCCAACAACAATGAGCATGCCGGTGAAAACGAGTTGCTTTTGCCCCAAGCTAACTCC 1240
Query 1247 ACAAGCGAAAGAAGAGAAATGGATCTGATAGAAATGCTCTCTGGTTCTACTCAAGGTAGC 1306
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1241 ACTAGCGAAAGAAGAGAAATGGATCTGATAGAAATGTTGTCTGGTTCTACTCAAGGTAGC 1300
Query 1307 AACATTTGGTTCCCATTGTTCTAGCTACCTTATGACCCATGTATGAGATCATCATTATCA 1366
||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1301 AACATTTGGTTCCCATTGTTCTAGCTACCGTATGA----TGTATGAGATC-TCATTATCA 1355
Query 1367 TATTGATAATTCCCTCTT-TAAttttttttttAGTGATCTAGTACTAttt--ttt---gt 1420
|||||||||||||||||| | || ||| |||||||||| ||||||||||| ||| ||
Sbjct 1356 TATTGATAATTCCCTCTTCTTATATTTATTTTAGTGATTTAGTACTATTTAATTTTATGT 1415
Query 1421 ttttaaaaaa-taaaaaGGAACTTCGATATATCATATTCATGCTTCTATTCATATCAAAA 1479
|||| |||| |||||| |||||| ||||| ||||||||||| |||| ||||||||||||
Sbjct 1416 TTTTTTAAAACTAAAAAAGAACTTAGATATCTCATATTCATGTTTCTTTTCATATCAAAA 1475
Query 1480 TAACT--AGGTTTATATATGCGCTACAATTGGTAGTCAGAGTTTTT 1523
||| | |||||| |||||||||||| ||||||||||||||
Sbjct 1476 GAACACCAAGTTTAT----GCGCTACAATTGATAGTCAGAGTTTTT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5