BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487938
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | ... 2145 0.0
AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | ... 942 0.0
> AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4
| chr5:3510118-3513305 FORWARD LENGTH=1810
Length=1810
Score = 2145 bits (1161), Expect = 0.0
Identities = 1433/1554 (92%), Gaps = 60/1554 (4%)
Strand=Plus/Plus
Query 173 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCACTTCACCGACCAACAACAACA 232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 281 CACGAAAACGATGGCGTTTCATAACAATCACTTTAATCATTTCACCGACCAACAACAACA 340
Query 233 CCAGCCTTCTCCTCCTCCGCCACCGTCACAGCAGCAACAACAACAACATTTTCATGAATC 292
||| | ||||||||||| ||| || | ||||| || |||||||||||||| |||||
Sbjct 341 TCAG-C--CTCCTCCTCCG---CCG-CA-A-CAGCAGCAGCAACAACATTTTCAAGAATC 391
Query 293 AGCTCCGCCTAATTGGCTCCTCCGCTCCGATAACAA-TT--TC---CT-CA-AC--CT-C 341
||| || ||||||||||||||||||||||| ||||| || || || || || || |
Sbjct 392 AGCACCCCCTAATTGGCTCCTCCGCTCCGACAACAACTTCCTCAATCTCCACACAGCTGC 451
Query 342 CAC-ACCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 400
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 CTCTGCCGCCGCTACAAGCTCCGATTCTCCTTCTTCCGCCGCCGCTAACCAGTGGCTCTC 511
Query 401 ACGATCCTCATCCTTCCTCCAACGCGGCGGAACA--GC--A-AACAACAACAACGAAACA 455
|||||||||||||||||||||||| ||| |||| || | ||||||||||||||||||
Sbjct 512 ACGATCCTCATCCTTCCTCCAACGAGGC--AACACCGCAAACAACAACAACAACGAAACA 569
Query 456 TCCGGTGACGTCATCGAAGACG-TCGCCGGCGGAGAGGAGTCAACGATCGGAGAGAAGAA 514
|||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 570 TCCGGTGACGTCATCGAAGACGTTC-CCGGCGGAGAGGAGTCAATGATCGGAGAGAAGAA 628
Query 515 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 629 GGAGGCGGAGAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTATA 688
Query 575 CGAGCAGCTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 634
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 CGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCT 748
Query 635 TCCGAGGATTGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTT 694
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 749 TCCGAGGATAGACGCACAGCTTGCTCAGTCTCAAAACGTCGTGGCTAAGTACTCAACTTT 808
Query 695 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 AGAAGCCGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCA 868
Query 755 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGC 814
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 869 TTATGTACTATTGCTTTGCTCTTTCAAAGAACAACTGCAACAGCATGTTCGTGTTCATGC 928
Query 815 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGT 874
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 929 AATGGAAGCTGTTATGGCCTGTTGGGAGATTGAACAGTCGCTTCAAAGTTTTACAGGGGT 988
Query 875 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 989 ATCTCCTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAG 1048
Query 935 TGATGCTCCTTTGTTTGATGGAAGCTTAGATGGTTTAGGGTTTGGTCCTCTAGTTCCCAC 994
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1049 TGATGCTCATTTGTTTGATGGAAGCTTAGATGGGTTAGGGTTTGGTCCTCTAGTTCCCAC 1108
Query 995 TGAGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCA 1054
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1109 TGAGAGCGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTCAAACATGAACTCAAGCA 1168
Query 1055 GGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1114
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 GGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGG 1228
Query 1115 AAAATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTG 1174
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1229 AAAATTACCAGGAGACACCACCTCTGTTCTCAAATCATGGTGGCAATCTCATTCTAAGTG 1288
Query 1175 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAA 1234
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1289 GCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACGGGTTTGCAGCTCAA 1348
Query 1235 ACAGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTC 1294
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1349 ACAGATAAACAATTGGTTCATCAATCAAAGAAAGAGGAATTGGCATAGCAATCCATCTTC 1408
Query 1295 TTCTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354
|||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||
Sbjct 1409 TTCTACCGTCTCAAAGAATAAACGCCGAAGCAATGCAGGTGAAAACAGCGGAAGAGACCG 1468
Query 1355 TTGAGGTCACTTTGAAGCTCGCATGGAGAGATCCAAAAGCTTAATAGAAAATTGGAGACA 1414
||||| ||| | ||| ||||| |||||||||||||||| ||||||| ||||| ||
Sbjct 1469 TTGAGATCA-----A-GCTTGCATGTAGAGATCCAAAAGCTTTATAGAAAGGTGGAGGCA 1522
Query 1415 TCATGAAGACAA-GAATTCTTACACAACAAACTTAGAACGTAATTTTTGTGTCATTACAT 1473
| |||||||| ||||||||||||||||||| ||| |||||||||| ||| || |||||
Sbjct 1523 T---GAAGACAAAGAATTCTTACACAACAAACGTAGGACGTAATTTT-GTGCCAGTACAT 1578
Query 1474 GGTATGACTTCCATAGTTCGTAATGATTAGGGA-ACACACCA--AG-CCCCAAAGTATGA 1529
|||||| ||| |||| || ||||||||||||| ||||| | | |||||||| ||||
Sbjct 1579 GGTATGGCTTTCATATTTGGTAATGATTAGGGCCACACAAAATTAAACCCCAAAGCATGA 1638
Query 1530 TTTGTAATATGAGGTTTTAGATGGACTACTTTATGATAGGATCGTCAGTCGTCG-T-C-A 1586
||||||||||||||||||||||||||| || |||||||||||||||||| || | | |
Sbjct 1639 TTTGTAATATGAGGTTTTAGATGGACT--TT-ATGATAGGATCGTCAGTCTTCACTGCCA 1695
Query 1587 -CTGCCAT-CTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAGATTTCTCG 1644
|| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1696 TCT-CCATTCTCCACCATCAATCCATCATTATATCTTGTGAATAACATGGAAATTTCTCG 1754
Query 1645 TTATAGCATTT-----GTGCAATCATTGGCCGTAATCTACACAAATATGCATAT 1693
|||| |||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1755 TTAT-GCATTTAATTTGTGCAATCATTGGCCGTAATCTACACAAATATACATAT 1807
Score = 285 bits (154), Expect = 9e-76
Identities = 171/178 (96%), Gaps = 6/178 (3%)
Strand=Plus/Plus
Query 1 AAGAAGAATAAATATAGGAATAAATCGTC-TTTTTGGTGTAAGCTACATATAAAATTCAA 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 45 AAGAAGAATAAATATAGGAATAAATCGTCTTTTTTGGTGTAAGCTACATATAAAATTCAA 104
Query 60 A-CGTTC-AA-ACACATACACATCGAAACCCTTATATTTCATTTTCTTTCT-TTTTAAAG 115
| || || || |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 105 ACCG-TCAAACACACATACACATCGAAACCCTTATATTTCATTTTCTTTCTGTTTTAGAG 163
Query 116 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 AAGAAAGTTTCTATAATTGATTGATAAATCTGAACATCAAAGCTAAGAATTTCTCTTC 221
> AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3
| chr5:8736074-8738584 FORWARD LENGTH=1899
Length=1899
Score = 942 bits (510), Expect = 0.0
Identities = 731/838 (87%), Gaps = 14/838 (2%)
Strand=Plus/Plus
Query 524 GAGGTGGCAGAATGCGAGACACAAGGCGGAGATACTGTCTCATCCACTCTACGAGCAGCT 583
||| ||||||||||||||||||||||||||||| || || ||||| || |||||||||||
Sbjct 590 GAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCT 649
Query 584 TTTGTCGGCACACGTGGCGTGCCTGAGGATCGCAACGCCGGTGGATCAGCTTCCGAGGAT 643
||||||||| ||||| || || |||| ||||| || ||||| |||||||||||||| ||
Sbjct 650 TTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAAT 709
Query 644 TGACGCACAGCTTGCTCAGTCGCAAAACGTCGTGGCTAAGTACTCAACCTTA---GAAGC 700
|| || |||||||||||||| ||| ||||||| ||||| |||||| | ||| | ||
Sbjct 710 CGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGC 769
Query 701 CGCTCAAGGACTCCTCGCCGGCGATGACAAGGAGCTTGACCACTTCATGACGCATTATGT 760
||||||||| | |||| |||||| || || || |||||||| |||||||| ||||||||
Sbjct 770 CGCTCAAGG--T-CTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGT 826
Query 761 ACTATTGCTTTGCTC-TTTCAAAGAACAATTGCAACAGCATGTTCGAGTTCATGCAATGG 819
| | || || || ||| ||||| ||||||||||| ||||| || |||||||||||||
Sbjct 827 GTTGCTACTGTGTTCATTT-AAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGG 885
Query 820 AAGCTGTTATGGCCTGTTGGGAGATTGAGCAGTCTCTTCAAAGTTTTACAGGAGTATCTC 879
||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 886 AAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTC 945
Query 880 CTGGTGAAGGCACAGGAGCAACAATGTCTGAGGATGAAGATGAGCAAGTAGAGAGTGATG 939
|||| ||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 946 CTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATG 1005
Query 940 CTCCTTTGTTTGATGGAAGCTTAGATGGT-TTAGGG-TTTGGTCCTCTAG-TTCCCACTG 996
|| | |||| ||||| | |||||| || || ||| ||||||||| | | |||| ||||
Sbjct 1006 CTAATATGTTCGATGGGGGATTAGAT-GTGTT-GGGTTTTGGTCCT-TTGATTCCTACTG 1062
Query 997 AGAGTGAGAGATCTTTGATGGAACGAGTCAGACAAGAACTTAAACATGAACTCAAGCAGG 1056
|||||||||| || ||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 1063 AGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGG 1122
Query 1057 GTTATAAGGAGAAAATTGTGGACATAAGAGAGGAGATACTGAGGAAGAGAAGAGCTGGAA 1116
|||| |||||||| || || |||||||||||||||||| | ||||||||||||||||| |
Sbjct 1123 GTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGA 1182
Query 1117 AATTACCAGGAGATACCACCTCTGTTCTCAAAGCATGGTGGCAATCTCATTCTAAGTGGC 1176
| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1183 AGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGC 1242
Query 1177 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAGGAGACAGGTTTGCAGCTCAAAC 1236
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1243 CTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAAC 1302
Query 1237 AGATAAACAATTGGTTCATCAACCAAAGGAAGAGGAACTGGCATAGCAATCCATCTTCTT 1296
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 1303 AGATAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTT 1362
Query 1297 CTACCGTCTCAAAGAACAAACGCAGAAGCAATGCAGGTGAAAATAGCGGAAGAGAGCG 1354
| || || | ||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1363 CCACTGTATTGAAGAACAAACGCAAAAGCAATGCAGGTGACAATAGCGGAAGAGAGCG 1420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83684308515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5