BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487939
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11070.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 813 0.0
> AT5G11070.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:3516217-3516995
REVERSE LENGTH=779
Length=779
Score = 813 bits (440), Expect = 0.0
Identities = 597/665 (90%), Gaps = 42/665 (6%)
Strand=Plus/Plus
Query 42 TTTTCAAGATCAAGAATGTACAACGAATGCAGCTCTCCCTCCACCGCAAGATCAACGACG 101
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 83 TTTACAAGATCAAGAATGTATAACGAATGCAGCTCTCCCTCCACCGCAAGATCAACAACG 142
Query 102 AGAGGAACTAATCACCGAATGAGATCTCCGATCTGTTGTTTAGGAGCCAACGCGGTGGTT 161
|||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 143 AGAGTCACAAATCACAGAATGAGATCTCCGATCTGTTGTATAGGAGCCAACGCGGTGGTT 202
Query 162 GAGCCTGAAGCCATGATGATC---GGAGAACAAAGAACTCCGAGATCTCCTTACGAATGG 218
||||| ||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 203 GAGCCAGAAGCCATGATGATCGGAGGAGAACAAAGAACACCAAGATCTCCTTACGAATGG 262
Query 219 CTCAAATCCACGGCGCAAGAACTCGAGTTAAGAGATCGGTGCCGGCGCGTGAAGTCACGT 278
|||||||| |||||||| || || ||||||||||||||||||||||| ||||||||||||
Sbjct 263 CTCAAATCTACGGCGCAGGAGCTAGAGTTAAGAGATCGGTGCCGGCGTGTGAAGTCACGT 322
Query 279 ATCAAGGTTACGTGTCGTAACAACAATTGTGC-T-T-ATAATTGTGTTCATCATCATCAG 335
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 323 ATCAAGGTTACGTGTCGTAACAACAATTGTGCTTATAATAATTGTGTTCATCATCAT--- 379
Query 336 AGACATCAGAGCCATCAGAGTTATCCTGGAGATTTCAGTTACGATCCGTTGAGTTACGCG 395
||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ---CATCATAG-C--CAGAGTTATCCTGGAGATTTCAGTTACGATCCGTTGAGTTACGCG 433
Query 396 CTCAATTTCGAGGATAATGTGCGAGCTGATGAAGATGGTTCTTTCCCGAATTTCACGGCG 455
||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||
Sbjct 434 CTCAATTTCGAGGATAATGTGAGAGCTGATGACGATGGTTCTTTTCCTAATTTCACGGCG 493
Query 456 AGGTTGCCTCAGTCGCCGGTGACGAAGACGAGATCAGCGACGGTTGATTTGATCTCGTTT 515
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 494 AGGTTGCCTCAGTCGCCGGTGACCAAGACGAGATCGGCGACGGTTGATTTGATCTC-TTT 552
Query 516 -TGACGG--T--TT--T-A-AA---GA------AAA----T--CTTTTCGTTTTCTTGTG 551
|||||| | || | | || || ||| | |||||||||||||||||
Sbjct 553 CTGACGGAATAATTAATTACAAAAAGATTCTTTAAAAAAATATCTTTTCGTTTTCTTGTG 612
Query 552 TGTGACGGTGGAATGTAACTGTTCGCCGGAGAAATGACGTAAGAATATGACGTCATGTAT 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 613 TGTGACGGTGGAATGTAACTGTTCGCCGGAGAAATGACGTAAGAATATGACGTCAGGTGT 672
Query 612 ATGTAAATGCTCTCTCGCCATATTGATTTGATATACTTGTGAAATTGATGTGTGCCaaa- 670
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 673 ATGTAAATGCTCTCTCGCCATATTGATTTGATATACTTGTAAAATTGATGTGTGC-AAAT 731
Query 671 aaaaa 675
|||||
Sbjct 732 AAAAA 736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5