BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487940

Length=840
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11080.2 | Symbols:  | Ubiquitin-like superfamily protein | ...   287    1e-76


> AT5G11080.2 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:3517223-3520003 REVERSE LENGTH=1730
Length=1730

 Score =  287 bits (155),  Expect = 1e-76
 Identities = 283/340 (83%), Gaps = 27/340 (8%)
 Strand=Plus/Plus

Query  376   AATATTTCAATGCTGCTTGTGGATGAAGTAAATGTCACGGATCCATCAGCCCGAAGATTG  435
             |||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct  1016  AATATTTCAATGTTGCTTGTGGATCAAGTAAATGTTACGGACCCATCAGCCCGAAGATTG  1075

Query  436   CGGCAAGAAAGAGTGGTTGAATCAGGAAGCCTCTTGTGTAACTTAGGAAGTTCACTTCTT  495
             ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  1076  CGGCAAGAAAGAGTGGTTGAATCAGGAAGCCTCTTGTGTCACTTAGGAAGTTCAATTCTT  1135

Query  496   GCG-----CCA---C-C-TCAAGAATTAGCATGGGAGAAACACA-G-TGTTCATA-TCCC  542
             |||     |||   | | |||||||||||||||||||||||||| | || |  |  ||  
Sbjct  1136  GCGTTAGGCCATGGCACCTCAAGAATTAGCATGGGAGAAACACAAGATGATGTTGGTCGT  1195

Query  543   CAACAGGG--CAAAATCGGTAACAGGTTTGT-TC--TT-CT-TCACATCACTCTTGGCTG  595
                ||| |  || | ||   |||||||     ||  || |  ||||||||||||||||||
Sbjct  1196  G--CAGTGTTCATA-TCCCCAACAGGTCAAAATCGGTTACAGTCACATCACTCTTGGCTG  1252

Query  596   CAAACAAGTATCGGAGCAGGAAGGAGCATAAGAGTTATATATTTCACGTCGGAGATCATC  655
             |||||||||||  ||||||||||||| |||||| ||||||    ||||| ||||||||||
Sbjct  1253  CAAACAAGTATTAGAGCAGGAAGGAGGATAAGAATTATAT----CACGTAGGAGATCATC  1308

Query  656   GAGGAATCAACAACATTTCGATCTCTATTTCGATGCATCT  695
             ||||||||||||||||| ||||||||||||| ||||||||
Sbjct  1309  GAGGAATCAACAACATTCCGATCTCTATTTCAATGCATCT  1348


 Score =  110 bits (59),  Expect = 3e-23
 Identities = 67/71 (94%), Gaps = 0/71 (0%)
 Strand=Plus/Plus

Query  242  GTGATTCCATATTCTATCACAACCTTATCTCGACATCTGAATCGTTTAAGACAAGTGTTT  301
            ||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  812  GTGATTCCAGATTCTATCACAACCTTATCTCGACATCTGGATCGTATAAGACAAGTGTTT  871

Query  302  GCTACCTATGG  312
            ||||| |||||
Sbjct  872  GCTACATATGG  882



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40940829805


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5