BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487944

Length=445
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11130.1 | Symbols:  | Exostosin family protein | chr5:35423...   621    2e-177


> AT5G11130.1 | Symbols:  | Exostosin family protein | chr5:3542320-3544724 
FORWARD LENGTH=1443
Length=1443

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 394/421 (94%), Gaps = 8/421 (2%)
 Strand=Plus/Plus

Query  1    ATGGCGGATCTGACATGTACGACGCCGTTTTTGCTCTATCCATCACTCGTCATCATCCTC  60
            |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct  1    ATGGCGGATCTGACTTGTACGACACCGTTTTTGCTCTATCCATCACTCGTTATCATTCTC  60

Query  61   TTCTTCTACTCAATTAACCACCATAACCAAATATTCTCCTCCGTCCTCGATGATGATCCT  120
            ||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct  61   TTCTTCTACTCCATTAACCACCATAACCAAATATTCTCATCCGTCGTTGATGATGATCCT  120

Query  121  TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTGAGAATCTTCCCTTTC  180
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  121  TCTTGTCGTCTCTCGTCTTCTCCACAAGCTGTTTTCTCTTCCTTCAGAATCTTCCCTTTT  180

Query  181  CGTTCTTCCTCTTCTTGTCTCAATATTACTTCCAACAACAATTCGACGTCAGAAGTTGTG  240
            |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  CGTTCTTCATCGTCTTGTCTCAATATCACTTCCAACAACAATTCGACGTCAGAAGTTGTG  240

Query  241  GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGAATCGAAGAAGGTTTGGCGATGGCTAGA  300
            |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  241  GTGGTAGAAGAAGTTGATGAAGCGGTGGAGAGGATTGAAGAAGGTTTGGCGATGGCTAGA  300

Query  301  GCCGCCATAAGGAAAGCCGGAGAAGAGAATCTCCGTCGTGATCG-GA-CG-A--A-TAAT  354
            |||||||||||||| ||||||||| ||||||||||||||||||| || || |  | ||||
Sbjct  301  GCCGCCATAAGGAAGGCCGGAGAAAAGAATCTCCGTCGTGATCGTGATCGGACGAATAAT  360

Query  355  TCGGATGTGGGATTCGTATC-AAGTGGATCTGTCTATCTCAACGCTTTTACTTTTCATCA  413
            |||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||
Sbjct  361  TCGGATGTGGGAGTCGTATCTAA-TGGATCTGTCTATCTCAATGCTTTTACTTTTCATCA  419

Query  414  G  414
            |
Sbjct  420  G  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21162722329


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5