BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487947
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11150.1 | Symbols: ATVAMP713, VAMP713 | vesicle-associated ... 1380 0.0
> AT5G11150.1 | Symbols: ATVAMP713, VAMP713 | vesicle-associated
membrane protein 713 | chr5:3546286-3548111 REVERSE LENGTH=1272
Length=1272
Score = 1380 bits (747), Expect = 0.0
Identities = 1020/1139 (90%), Gaps = 70/1139 (6%)
Strand=Plus/Plus
Query 53 CTCAAAATCATTGCAACAATTCAATTTCAGATGTATGGTGGTGAGATGCTTTGATTACAA 112
|||||||||||| ||| ||||||||||||||||||||||| | | | ||||||||||||
Sbjct 85 CTCAAAATCATTTCAATAATTCAATTTCAGATGTATGGTGAT--GCTTCTTTGATTACAA 142
Query 113 GTCGGCGTTGAACAATTCTCCGATTTTACACTCCAATCGAAT--C--------------- 155
|||||||||||||||||||||||||||||||| |||||||| |
Sbjct 143 ATCGGCGTTGAACAATTCTCCGATTTTACACTCTAATCGAATCACTTTGGGGTGTTTTGT 202
Query 156 --ATCGTTGTTCTCAAGATCTGAGATTTACAGAGAGAAGTGA----G--C----T---GG 200
|||| ||||||||||||||||||||||||| ||||||||| | | | ||
Sbjct 203 TAATCGCTGTTCTCAAGATCTGAGATTTACAGGGAGAAGTGAGCTGGAACAAGGTGCCGG 262
Query 201 AGTAGATGGCGATCATATTTGCGTTGGTGGCTCGAGGAACGGTGGTGTTATCGGAGTTTA 260
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 263 AGTAGATGGCGATCATATTTGCGTTGGTGGCTCGTGGAACGGTGGTGTTATCGGAGTTTA 322
Query 261 GCGCTACTTCGACTAACGCTAGCTCAATCGCGAAGCAGATTTTGGAGAAGTTGCCTGGAA 320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 323 GCGCTACTTCGACTAACGCTAGCTCAATCTCGAAGCAGATTTTGGAGAAGTTGCCTGGAA 382
Query 321 ACGATAGCGATAGCCATATGTCTTACTCTCAGGATCGGTACATCTTCCATGTGAAACGAA 380
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 383 ACGATAGCGATAGCCATATGTCTTACTCTCAGGATCGCTACATCTTCCATGTGAAACGAA 442
Query 381 CCGATGGTCTTACCGTTCTCTGTATGGCCGATGAAACCGCCGGAAGGAATATTCCGTTTG 440
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 443 CAGATGGTCTTACCGTTCTCTGTATGGCCGACGAAACCGCCGGAAGGAATATTCCGTTTG 502
Query 441 CGTTTTTGGATGATATTCATCAGCGATTTGTGAGAACGTATGGCCGTGCGATTCATTCCG 500
||||||||||||||||||||||| | ||||||| ||| |||||||| || |||||||| |
Sbjct 503 CGTTTTTGGATGATATTCATCAGAGGTTTGTGAAAACATATGGCCGAGCTATTCATTCAG 562
Query 501 CTCAAGCTTATTCCATGAATGATGAATTTTCAAGAGTTGTGAGTCAGCAGATGGAATACT 560
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |
Sbjct 563 CTCAAGCTTATTCCATGAATGATGAATTTTCAAGAGTTCTGAGTCAACAGATGGAGTTTT 622
Query 561 ATTCCAATGATCCAAATGCAGACAGGATGAGCAGAATTAAAGGTGAAATGACTCAGGTTC 620
||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 623 ATTCCAATGATCCTAATGCAGACAGGATGAGCAGAATCAAAGGTGAAATGAGTCAGGTTC 682
Query 621 GAAATGTGATGATTGAGAATATTGATAAAGTCTTGGATAGAGGGGAGCGCTTGGAGTTGC 680
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 683 GAAATGTGATGATTGAGAATATTGATAAAGTTTTGGATAGAGGGGAGCGTTTGGAGTTGC 742
Query 681 TGGTTGATAAAACCGAAAATATGCAAGGCAACACTTTTCGTTTCAGAAAGCAAGCTCGCC 740
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 743 TAGTTGATAAAACCGAAAATATGCAAGGCAACACTTTTCGTTTCAGAAAGCAAGCTCGTC 802
Query 741 GTTACAGAACCATTATGTGGTGGAGGAATGTCAAGCTTACGATTGCTCTGATACTTGTAC 800
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 803 GTTACAGAACCATTATGTGGTGGAGAAATGTCAAGCTTACAATTGCTCTGATACTTGTAC 862
Query 801 TCGCATTGGTTGTATACATCGCGATGGCCTTTGTTTGCCATGGGCCAAGTCTTCCTTCAT 860
| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 863 TAGCTTTGGTTGTGTACATCGCGATGGCCTTTGTTTGCCATGGGCCAAGTCTTCCTTCTT 922
Query 861 GTTTCAAGTAAGAAGACAGTATCTTATCTTC---ACCATTCCCTTCTTGGGAATTTATCA 917
|||||||||||||||||| | |||||||||| ||| ||||||||||||||||| ||||
Sbjct 923 GTTTCAAGTAAGAAGACATTCTCTTATCTTCTTCACCTTTCCCTTCTTGGGAATT-ATCA 981
Query 918 GACTCTGGTTCGATTTTGGAATGTGAGAT-AT--GCCTT-GTGTAAAATGTGTGTTTATG 973
||||||| ||||||||||||||||||||| || || || || |||||||||||||||||
Sbjct 982 GACTCTGCTTCGATTTTGGAATGTGAGATTATATGCGTTTGTCTAAAATGTGTGTTTATG 1041
Query 974 TGCTCTTTCAAATAGCAGCTTCTGCTTATTGCTTTGAATTA-----T---T-ATTT---- 1020
|| |||||||| | |||||||||||||||||||||||||| | | ||||
Sbjct 1042 TGATCTTTCAATTT-CAGCTTCTGCTTATTGCTTTGAATTACAGAGTCGATTATTTATTT 1100
Query 1021 GTAAGTGTGATATTTCACTGTTAATGATCATCCCCTGTCTGTTTGCAATTTATGCTGCGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GTAAGTGTGATATTTCACTGTTAATGATCATCCCCTGTCTGTTTGCAATTTATGCTGCGG 1160
Query 1081 CGTTAA--G----AT-----GA---CGTTTTTAGCTTTTGCTGGATCTGTGAAGAATTT 1125
|||||| | || || ||||||||||||||||| ||||||||||||||||
Sbjct 1161 CGTTAAAAGTTGTATTAAATGATGACGTTTTTAGCTTTTGCTTGATCTGTGAAGAATTT 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5