BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487948
Length=1037
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11160.1 | Symbols: APT5 | adenine phosphoribosyltransferase... 1280 0.0
> AT5G11160.1 | Symbols: APT5 | adenine phosphoribosyltransferase
5 | chr5:3550520-3552207 FORWARD LENGTH=1051
Length=1051
Score = 1280 bits (693), Expect = 0.0
Identities = 956/1073 (89%), Gaps = 58/1073 (5%)
Strand=Plus/Plus
Query 1 CAACTGGTGGTGAACAGAGGAACAGAGCGAGACAGAGAC------ACACA-AGAG-AGA- 51
||||||||||||||||||||||||||||||||||||||| | | | |||| |||
Sbjct 1 CAACTGGTGGTGAACAGAGGAACAGAGCGAGACAGAGACATAGAGAGAGAGAGAGAAGAG 60
Query 52 A-AATATCTGATCTCATTTCATTTCCTCGTTTCCTTCTTCTGCGAGGGAAATTTAATTGT 110
| || |||||||||||||||| || || |||||||||||||||||||||||||| ||||
Sbjct 61 AGAAGATCTGATCTCATTTCA-TT--TCATTTCCTTCTTCTGCGAGGGAAATTTATTTGT 117
Query 111 TTTCTACTTTGAA---------A--T-CT-TC-C--Cagagagagaga----gagagaTT 150
|| |||||||||| | | || || | ||||||||||| ||||||||
Sbjct 118 TTCCTACTTTGAATTCTTCCCCATTTACTCTCTCAAGAGAGAGAGAGAGTGCGAGAGATT 177
Query 151 GATATACACAAGTGAAGACGCTCCTTGACTCTCTCAGAATTGAAATTTCAAAACTTTaga 210
||| ||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 178 AATACACACAAGTGAAGACGCTCCTTAACTCTCTCAGAATTG--------AAACTTT--A 227
Query 211 gagaaagagaagagagagagagagagagaAACGATGTTCGCGGCGGAGAATGGTCTTAAA 270
| | ||| |||||| ||||||||||| ||| |||||| ||||||||||||||||| |||
Sbjct 228 GTG--AGA-AAGAGA-AGAGAGAGAGA-AAA-GATGTTTGCGGCGGAGAATGGTCTCAAA 281
Query 271 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGAGTTGTTCCTAATTTCCCCAAG 330
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 282 GGAGATCCAAGGCTTGAAGCTATATCAGCAGCCATTAGGGTTGTCCCTAATTTCCCTAAG 341
Query 331 AAAGGGATTATGTTTCAGGACATAACAACGTTGTTATTGGATCGCAAGGCGTTTAAACAT 390
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||
Sbjct 342 AAAGGGATTATGTTTCAGGACATAACTACGTTGTTACTGGATCACAAGGCGTTTAAACAC 401
Query 391 ACAATTGACATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 450
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 ACAATTGATATCTTCGTAGATCGTTACAAAGACATGCAAATCTCTGTCGTTGCTGGAGTT 461
Query 451 GAAGCAAGAGGCTTCTTGTTCGGTCCCTCCATTGCATTAGCTATCGGCGCAAAGTTTGTC 510
||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||||| ||
Sbjct 462 GAAGCAAGAGGTTTCTTGTTTGGTCCTTCCATTGCATTAGCCATCGGCGCAAAGTTTATC 521
Query 511 CCTTTGCGTAAACCAGGGAAATTACCAGGGAAAGTGATATCAGAGTCTTATGAGCTCGAG 570
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 522 CCTTTGCGTAAACCAGGAAAATTACCAGGGAAAGTGATATCGGAGTCTTATGAGCTCGAG 581
Query 571 TATGGACATGACCGTTTAGAGATGCATGTGGGTGCCGTTGAGCCACGCGAACGCGTCATT 630
||||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 582 TATGGGCATGACCGTTTAGAGATGCATGTTGGCGCTGTTGAGCCACGCGAACGCGTCATT 641
Query 631 ATCATCGATGATCTTGTTGCTACGGGCGGCACTCTTTCAGCCGCCATGAGCCTATTGGAA 690
||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 642 ATCATTGATGATCTTGTTGCTACTGGCGGCACTCTTTCTGCCGCAATGAGCCTATTGGAG 701
Query 691 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCCTGCCTGAAGTCAAGGGG 750
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 702 AGCCAAGGAGCTGAAGTTGTTGAGTGTGCTTGTGTTATTGGCTTGCCTGAAGTCAAGGGG 761
Query 751 CAACACAAGCTGAAAGGGAAGCCGCTTTATGTGCTGGTGGAGCCTAGTGGATTAGATGAG 810
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 762 CAACACAAGCTCAAAGGGAAGCCGCTTTATGTGTTGGTGGAGCCTAGTGGATTAGATGAG 821
Query 811 TTCTGTTAGGGTACATATCGGTTAATTCCGGTTCAGtttt-tttCCCCTTCAGAGTTCAT 869
|||||||||| |||||| |||||| ||||||||||||||| |||||| | ||||||||||
Sbjct 822 TTCTGTTAGGATACATACCGGTTACTTCCGGTTCAGTTTTCTTTCCC-TGCAGAGTTCAT 880
Query 870 GTTCCTATTC-CAAA-TTTCTAAGGTTCCAACTTCTTGTATTCGTTCTCATTT-TACGTT 926
|||| | || |||| |||||| |||||||||||||||||||||||||| ||| | | |
Sbjct 881 GTTCTTTTTTTCAAAATTTCTAGGGTTCCAACTTCTTGTATTCGTTCTCGTTTATT-GAT 939
Query 927 CTCTGTAGATTTTGAATTTTGATGTCTACTTTCCACGGCAGTGGTTGGTAAAAA-CCGGG 985
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 940 CTCTGTAGATTTTGAATTTTGATGTGTACTTTCCACGGCAGTGGTTGGTAAAAAACCGAG 999
Query 986 ATATTCAAAATAGTCTTTACAATTCC-GGATTTGGTAGATTTTCTGATGGATC 1037
||| | |||| |||||||||| |||| || |||||| || |||||||||||||
Sbjct 1000 ATACTGAAAAGAGTCTTTACATTTCCCGG-TTTGGTGGAATTTCTGATGGATC 1051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50836956764
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5