BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487955
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1120 0.0
> AT5G11220.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3577057-3577978
FORWARD LENGTH=922
Length=922
Score = 1120 bits (606), Expect = 0.0
Identities = 738/802 (92%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACGTGGTTTTGGCTTGAAGACtttttttCTCAAAACATCTTATCAACCATATTG 60
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTACATGGTTTTGGCTTGAGGACTTTTTTTCTCAAAACATCTTATCAACCATATTG 60
Query 61 GCTTTAAGCGATCCAGTCATTGTGGCTTTAGCTAACGAGGCGGTCTTGTGCTTCCAATGC 120
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 61 GCTTTAAGCGATCCAGTCATTATGGCTTTAGCTAACGAGGCTGTCTTGTGCTTCCAATGC 120
Query 121 CTTGATTCTGGTGAGAAGCCAAATGGCTTCAATCATATCCCTCTCACCGCAGAACTCTTG 180
|||||||||| |||| ||||||||| ||||||||| |||||||| || |||||||||||
Sbjct 121 CTTGATTCTGCTGAGCAGCCAAATGACTTCAATCAGATCCCTCTTACTGCAGAACTCTTA 180
Query 181 GCAAAAGACATATCTCTTCAAATATT-CTACAAACACCGATACAGTGCTATCGCAGGAAT 239
|||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||
Sbjct 181 GCAAAAGACATATCTCTTCAAATATTTC-ACAAACACCGATACAGTGCTATTGCAGGAAT 239
Query 240 CAAAAACTTTTTAACCACTGTTTGTTCAAGAATTTTTTCTGACATACTTCAACAAGCTCT 299
|| |||||||||||||||||||||||| ||||| |||||||| || ||||||| ||||||
Sbjct 240 CAGAAACTTTTTAACCACTGTTTGTTCTAGAATATTTTCTGATATTCTTCAACGAGCTCT 299
Query 300 TCCATCTTCTTCATCATATACTTTTGTCACTAGATTCCGCCATCCTCTAATCATCCCCGG 359
|||| |||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||
Sbjct 300 TCCACCTTCTTCATCATATCCTTTTGTCACCAGACTCCGCCATCCTCTTATCATCCCCGG 359
Query 360 TTTTCCCCATCCGACGTTTGGAAGCATCAATGTTATGCCCGATGTCGTTGTTGGGGATAA 419
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||
Sbjct 360 CTTTCCCCATCCGACGTTTGGGAGCATCAATGTTATGCATGATGTTGTTGTTGGGGATAA 419
Query 420 TATCTACAACAACAACATAGTTCTT-TGTTCTCATGGTCTATGGGGTTGGAACGCTAACT 478
| |||||||||||||| || ||| ||||||||||||||||||||||||||||||| ||
Sbjct 420 TCTCTACAACAACAACTTA-TTCCCATGTTCTCATGGTCTATGGGGTTGGAACGCTAGCT 478
Query 479 GCATCGCGTCTGATATCGAAAGGACTATGTTTTTAACATTTTCTCGTGGGTTTCCTGTTT 538
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GCATCGCAACTGATAACGAAAGGACTATGTTTATAACATTTTCTCGTGGGTTTCCTGTTT 538
Query 539 CGCAAGCGGAGGTGAAAAGTTTTTTCACCAAAAAATATGGAGAAAATTGTGTTGAAGGCG 598
||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||
Sbjct 539 CGCAAGCGGAGGTGAAACGATTTTTCACCAAAAACTATGGAGAAAATTGTGTTGAAGGCG 598
Query 599 TTTACATGCACGAGGACAACG-GCAACTCCCCCAACGCAAATGTAAAT-AGCAATGGCCA 656
|||||||| | ||||||||| | |||| || |||||||||| ||| | |||||| ||
Sbjct 599 TTTACATGAAAGAGGACAACAAG-AACTTCCTTAACGCAAATGGGAATGA-CAATGGTCA 656
Query 657 ACAACAATCACTATTTGCAAAGCTGGTCTTAGATTCAATTGCTACTGTGGATCGTATACT 716
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 657 ACAACAATCACTATTCGCAAAGCTGGTCTTAAATTCAGTTGCTACTGTGGATCGTATACT 716
Query 717 CGACGGCGAGAAGATAAAAAGGTTCAAGTCTAATGGAAAACATATTTGGGCTCGTAAGTA 776
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CGACGGCGAGAAGATAAAAAGGTTTAAGTCTAATGGAAAACATATTTGGGCTCGTAAGTA 776
Query 777 TAGCATGAGTAGAGATGGTTAA 798
|||||||| |||||||| ||||
Sbjct 777 TAGCATGACTAGAGATGATTAA 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5