BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487959
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11270.1 | Symbols: OCP3 | overexpressor of cationic peroxid... 1591 0.0
> AT5G11270.1 | Symbols: OCP3 | overexpressor of cationic peroxidase
3 | chr5:3595285-3597098 REVERSE LENGTH=1359
Length=1359
Score = 1591 bits (861), Expect = 0.0
Identities = 1046/1130 (93%), Gaps = 34/1130 (3%)
Strand=Plus/Plus
Query 1 GAAAACAGCAAACAGTTTTGATGATAAAATTAAAAGCTATGGCGGTTGCTCTATCTTCTT 60
||||||||||||||||||||||| | ||||||| || | ||||||||||||
Sbjct 3 GAAAACAGCAAACAGTTTTGATG-----A-TAAAAGCCAT----G--GCTCTATCTTCTG 50
Query 61 CCGGCGTCGTCTCTCATCTTCATCCTCCGTCGTTTTCTTCGTCGTCAGG-TCTATCCGTC 119
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 51 CCGGCGTCGTCTCTCATCTTCATCCTCCGTCGTTTTCTTCGTCGTCAGGAT-TATCCGTC 109
Query 120 AACAGAGTTCTGTTTCGGAATCGGAACGCTAGTCCTCGTGGTGTAGCTCTTCCAATTCTC 179
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 110 AACAGAGTTCTGTTTCGGAATCGGAACGCTAGTCCTTGTGGTCTATCTCTTCCAATTCTC 169
Query 180 AGTCCGTCTCGATCTGTACTCGTATTTGCTCGTGGGAAGAACCGAAAAGGATTC--G--- 234
| ||||||||| |||||||| || ||||||||||| ||||| |||||||||||| |
Sbjct 170 AATCCGTCTCGGTCTGTACTTGTTTTTGCTCGTGGCAAGAATCGAAAAGGATTCGTGTCT 229
Query 235 -CGTCTTCGTCGTCTCCGAAGAAGAACAAAAAGAAAAGTTTCGATGGAGCTGATAATGGA 293
||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 230 TCGTCTTCTTCGTCTCCGAAGAAAAACAAAAAGAAAAGTTTGGATGGAGCTGATAATGGA 289
Query 294 GGAGGTGAGGAGGAGGATGATCCATTTGAGGCGTTGTTTAATCTATTGGAAGAAGATTTG 353
||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||
Sbjct 290 GGAGGTGAGGAGGAGGAGGATCCATTTGAGGCATTGTTTAATCTTTTAGAAGAAGATTTG 349
Query 354 AAAAATGATAACTCGTCAATAGATGATGAGGAGATAAGTGAGGAAGACTTAGATGCCTTA 413
|| |||||||||||| |||||||||||||||||||||||||| ||||| || |||
Sbjct 350 AAGAATGATAACTCG------GATGATGAGGAGATAAGTGAGGAAGAGTTAGAGGCATTA 403
Query 414 GCAGAGGAGTTAGCTCGAGCGTTGGGTGGTGGTGACGATGTTGATGGCATCGACTTGTTT 473
|| || |||||||||||||| ||||||| ||||||||||||||||| |||||||||||||
Sbjct 404 GCCGATGAGTTAGCTCGAGCATTGGGTGTTGGTGACGATGTTGATGACATCGACTTGTTT 463
Query 474 GGTTCAGTCACTGGtgatgttgatgttga---taatgatgatgatgatgatgatgatgaa 530
||||||||||||||||||||||||||||| | || |||||||||||||| |||||||
Sbjct 464 GGTTCAGTCACTGGTGATGTTGATGTTGATGTTGATAATGATGATGATGATAATGATGAT 523
Query 531 gatga-agatgacgaagatgatgatgacagtgaagaagaagatgaaagaccgactaagct 589
||||| | |||| || ||||||||||||| | ||||||||||||||||||||||||||
Sbjct 524 GATGATA-ATGATGATGATGATGATGACA--G-CGAAGAAGATGAAAGACCGACTAAGCT 579
Query 590 gaagaaTTGGCAGCTTAGAAGATTGGCTTATGCATTGAAAGCTGGGCGTCGTAAAACTAG 649
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 580 GAAGAATTGGCAGCTTAAAAGACTGGCTTATGCATTGAAAGCTGGGCGTCGTAAAACTAG 639
Query 650 TATAAAAAATCTGGCAGCTGAGGTTTGTCTTGACAGGGCTTATGTTCTTGAATTGCTTCG 709
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TATTAAAAATCTGGCAGCTGAGGTTTGTCTTGACAGGGCTTATGTTCTTGAATTGCTTCG 699
Query 710 TGACCCGCCTCCGAAGCTTCTAATGCTAAGTGCTACACTACCAGATGAAAAACCACCAGT 769
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 TGACCCGCCTCCAAAGCTGCTAATGCTAAGTGCTACACTACCAGATGAAAAACCGCCAGT 759
Query 770 AGCAGCACCTGAAAACTCCTCACCTGATCCAATTCCTGTGGAATCATCAACAGCTGAAGA 829
|||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||||
Sbjct 760 AGCAGCACCTGAGAACTCCTCACCTGATCCAAGTCCTGTGGAATCATTATCAGCTGAAGA 819
Query 830 TGTTGTGGTCGAACCTAAGGAAAAAGTAAAAGATGAAGCAGTTCATGTGATGCAACAGAG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 820 TGTTGTGGTCGAACCTAAGGAAAAAGTAAAAGATGAAGCAGTTCATGTGATGCAACAGAG 879
Query 890 ATGGTCTGCTCAGAAAAGAGTGAAGAAAGCTCACATTGAAACGCTAGAGAAAGTTTACAG 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 ATGGTCTGCTCAGAAAAGAGTGAAGAAAGCTCACATTGAAACGCTAGAGAAAGTTTACAG 939
Query 950 AAGATCAAAACGACCAACTAATGCTGTGGTTAGCAGCATTGTTCAAGTGACCAATCTTCC 1009
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAGATCAAAACGACCCACTAATGCTGTGGTTAGCAGCATTGTTCAAGTGACCAATCTTCC 999
Query 1010 AAGGAAGCGAGTTTTGAAGTGGTTCGAAGATAAACGAGCAGAAGACGGAGTTCCAGATAA 1069
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1000 AAGGAAGCGAGTTTTGAAGTGGTTCGAAGATAAAAGAGCAGAAGACGGAGTTCCAGATAA 1059
Query 1070 GAGAGCTCCATACCAAGCTCCGGTTTGATCTAATGTTAACATTGAGCTGG 1119
| |||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1060 GCGAGCTCCATATCAAGCTCCGGTTTGATCTAATGTTAACGTTGAGATGG 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5