BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487960
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11280.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1391 0.0
> AT5G11280.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G80200.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:3597247-3598521 FORWARD LENGTH=878
Length=878
Score = 1391 bits (753), Expect = 0.0
Identities = 828/865 (96%), Gaps = 2/865 (0%)
Strand=Plus/Plus
Query 1 CTGGTAACAACGGGTCCActctctctttctctgtctctctctctAGATTCGATTTCGTTG 60
|||||||||||||||||||||| | ||||| |||||||||||||||| |||||| |||
Sbjct 6 CTGGTAACAACGGGTCCACTCT-GC-ATCTCTCTCTCTCTCTCTAGATTTGATTTCTTTG 63
Query 61 CGGGCTTGTTAATGGCGAATCCAGGGCAATCAAAGGGATGGATTAAGAAATGGACGTCCA 120
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 64 CGGGCTTGTTAATGGCGAACCCAGGGCAATCAAAGGGATGGATAAAGAAATGGACGTCTA 123
Query 121 TGGCTTCATCGGTTTACTTCGTCTTGATCATATTCCAGATCCCTCTCTTCAGGGTTCCAT 180
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 124 TGGCTTCATCGGTTTACTTCGTCTTGATCTTATTCCAGATCCCTCTCTTCAGAGTTCCAT 183
Query 181 GTAGATCTGGTATGTGTTCATCTCCGATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 240
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 184 GTAGATCTGGTATGTGTTCATCGCCAATCCATGTGACATCGTCTCAGTTGATTTCTAGTG 243
Query 241 AGATCTTTCCTGTTCCGGTGATTAAGGCTCTCCTATTCCCTGGTGCTGTAGTCAATGGTC 300
||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 244 AGATCTTTCCTGTTCCGATGATTAAGGCTCTCTTATACCCTGGTGCTGTAGTCAATGGCC 303
Query 301 TTGCCACCAACCTGACCTTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 360
|||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TTGCCATCAACATGACATTTCCAAAGTGGGAAAATGTGTTAGATATCTACAATCTCACCA 363
Query 361 ATGTGAAAGAAGCATCTGCAGTGACCGATCTTCAGCGCCTAGAGGTTCTTGCAGGGAGCT 420
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 364 ATGTGAAAGAAGCTTCTGCAGTGACCGATCTTCAACGCCTAGAGGTTCTTGCAGGGAGCT 423
Query 421 ACTTTTCTGTAGCTGGGGCGTTGGTTGGTTTGCTTAAGCCCGGTAGGATGAGCATGTTTG 480
|||||||||||||||||||||| || |||||||| ||||| || ||||||||||||||||
Sbjct 424 ACTTTTCTGTAGCTGGGGCGTTTGTGGGTTTGCTAAAGCCTGGAAGGATGAGCATGTTTG 483
Query 481 GGTCATTGCTACTAGTTTGGGGGCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 540
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 484 GGTCATTGCTACTAGTATGGGGTCTTGTTAAAGAAGGGATCTTAGGGAAGCCAGTAAATA 543
Query 541 CTGACCCAGCCAAAACCGTTTATGTGTACCCGACCATGGTGCTTGCAATGATCTGCGCTT 600
|||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||
Sbjct 544 CTGACCCAGCCAAAACTGTTTATGTGTACCCAACTATGGTGCTTGCGATGATCTGCGCTT 603
Query 601 TCTCTATGATAAAGTATGACTTGAAGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 604 TCTCTATGATAAAGTATGACTTGAGGAAAGCCACGAGGGCAGCTCCAGCTCGTCCCATTG 663
Query 661 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 CTAAACCTCTAATGAGCTCTTCAAAATCTAAGCTGAAGTGAGTTTTTTGAGACTTAATAG 723
Query 721 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GGCTTGTGTCCTGTCTTTGTACCAACACCCGGGAAAGGAAAATGTCCCGGAAAATGGCAT 783
Query 781 TGTCACTGTATTTTACTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 840
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGTCACTATATTTTGCTCTCAGTTACCTTATGTTTCATGAATTGTCTATTTTCTAGGACA 843
Query 841 CTGCTCAGTAGTCAATATCTTCCAA 865
|||||||||||||||||||||||||
Sbjct 844 CTGCTCAGTAGTCAATATCTTCCAA 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5