BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487973
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11400.2 | Symbols: | Protein kinase superfamily protein | ... 669 0.0
> AT5G11400.2 | Symbols: | Protein kinase superfamily protein
| chr5:3636614-3638059 REVERSE LENGTH=915
Length=915
Score = 669 bits (362), Expect = 0.0
Identities = 469/516 (91%), Gaps = 26/516 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAATTCTCTAAAGCATCTCAAACAACAACTTCCCTT-ACTTGCTCCCAAGCCTCT 59
|||||||| | |||||||||| |||||||||||||| |||| | ||||||||||||||||
Sbjct 1 ATGGGAAACTGTCTAAAGCATTTCAAACAACAACTT-CCTTCAATTGCTCCCAAGCCTCT 59
Query 60 CCTTATCCCTCCAATATTTTCAGTGGAGCCAGAAAACGAGAATCTGAGAGTCTTCAGATT 119
| |||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct 60 CATTATCCCTCCAATA-TTT---T------------C-AGAATCTGAGAGTCTTCAGATT 102
Query 120 CGCGGATTTGAAGAAAGCAACGAAGAAATTCAGACAAGACAGGGTCGTAGAATGCGAGGA 179
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 103 CGCGGA-TTGAAGAAAGCGACAAAGAAATTCAGACAAGACAGGGTCGTAGAATGCGAGGA 161
Query 180 TGGCTCTGTTCGAAAATTCCACAAGGGCTACATAGATGAAACCACATTTGCACCATCAAG 239
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 162 TTACTCTGTTCGAAAATTCTACAAGGGCTACATAGATGAAACCACATTTGCACCATCAAG 221
Query 240 AAGAACTGGAGCCGGAATCGCTGTTTCTGTCATGGAATGTGATAGTTCACGCTCTCTACA 299
|| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 222 -AG--CTGGAACCGGAATCGCTGTTTCTGTCATGGAATGTGATAGTTCACGCTCTTTACA 278
Query 300 AGACTGGATGGCAGTAGTGAGGTCTCTTGGACAGATGTCACATCAGAATTTGGTCGATTT 359
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 279 AGACTGGATGGCAGTAGTGAGGTCTCTTGGACAGTTGTCTCATCAGAATTTGGTCAATTT 338
Query 360 CTTGGGTTACTGTTATGAAGACAACAAACCACTCTTCTTGGTTTTTGAATACTCGCACAA 419
|||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 339 CTTGGGTTACTGTTGTGAAGACAACAAACCATTCTTCTTGGTATTTGAATACTCGCACAA 398
Query 420 AGGAAGTCTGGACCGTCACATTTTCGGAAAAGAAGA-G-G-CATTGCCATGGGAAATACG 476
||||||| ||||| |||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 399 AGGAAGTTTGGACAGTCACATTTTCGGAAAAGAAGAAGAGGCATTGCCATGGGAAATACG 458
Query 477 TGTTAAGATAGCCATTGGAACAGCTCAAGGTCTCGC 512
|||||||||||||||||||||||||||||||||||
Sbjct 459 GGTTAAGATAGCCATTGGAACAGCTCAAGGTCTCGC 494
Score = 292 bits (158), Expect = 3e-78
Identities = 191/207 (92%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 671 TAGATTTCTGGA-CTACATCTCTCTTGCCCGATAGTTATAAGATTGAGGAAATAATCGAT 729
|||||| ||||| || ||||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 710 TAGATTACTGGACCT-CATCTTTCTTGCCAGATAATTATAAGATTGAGGAAATAATCGAT 768
Query 730 CCCCGGCTTGGGAACGATTATTCTGCGAATGCGGCTACACAGATGGGCACACTCATCAAC 789
||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 769 CCCCGACTTGGGAGCGATTATTCTGCGAATGCGGCGACACAGATGGGCACACTCATCAAC 828
Query 790 CGATGCACAGCGCATGACACAAAGAAACGACCATTGATGCAGCAAGTTTTGGATGGTCTG 849
||||||||||||||| | ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 829 CGATGCACAGCGCATAATACAAAGAAACGGCCATTGATGCAACAAGTATTGGATGGTCTT 888
Query 850 AATTATATTGCAGAGATTAAGGACTAA 876
||| |||||||||||||||||||||||
Sbjct 889 AATCATATTGCAGAGATTAAGGACTAA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5