BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487975

Length=673
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11412.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   566    1e-160


> AT5G11412.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:3640026-3640876 REVERSE LENGTH=851
Length=851

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 430/488 (88%), Gaps = 15/488 (3%)
 Strand=Plus/Plus

Query  16   tttctcgattgttgggactttctttttact-tttttcttcttaagactttGTGACAGAGA  74
            |||||  |||||||| |||||||| | |||  |||| || || | || ||||||||||||
Sbjct  55   TTTCT-AATTGTTGGAACTTTCTTGTCACTAATTTT-TT-TTGATAC-TTGTGACAGAGA  110

Query  75   CATGGCTCAACATTACGCGAACCAAAACGTCGACACGAGATACACCAAGATATACGTGGG  134
            | |||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||||
Sbjct  111  CGTGGCTCAACATTACGCGAACGAAAACGTTGACACTAGATACACTAAGATATACGTGGG  170

Query  135  AGGTTTGCCTTGGAAAACAAGAAATGAAGGTTTGAAAAGCTACTTCCAACAATTTGGAGA  194
            |||| |||||||| |||||||||| |||||||||| ||| |||||| |||||||||||||
Sbjct  171  AGGTCTGCCTTGGGAAACAAGAAACGAAGGTTTGAGAAGTTACTTCGAACAATTTGGAGA  230

Query  195  AATTATCCATGTTAATGTGGTTTGTGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT  254
             ||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  231  TATTATACATGTTAATATGGTTTGCGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT  290

Query  255  TGTCACGTTTAGAGATGTTGAATCTGCAACGAGAGTTTGCCAGAATCCAAAACCGGTCAT  314
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  291  TGTCACGTTTAGAGATGCTGAATCTGCAACGAGAGCTTGCCAGAATCCAAAACCGGTCAT  350

Query  315  AGACGGACGAGAGGCCAAGTGCAACCTTGCTTATATTGGTGCTAGGGTTAACAATAACCA  374
            |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct  351  AGACGGACGAGAGGCCAAGTGCAATCTTGCTTATATTGGTGGTAGGGTTAACAATAACCA  410

Query  375  AAACGCCCAACAAGTAGAAGT-CTA--T--GTACCCAACTGGAACCAGTTTC-AGTTTGC  428
            |||||||||||||  | |||| |||  |  |||||||||||| ||||||||| |     |
Sbjct  411  AAACGCCCAACAACAACAAGTACTACCTATGTACCCAACTGGGACCAGTTTCCAC----C  466

Query  429  ACCAGAATATGATCCCTACACACTTTGTTGTTATTGGACACAACATGGTTCTTACTGCGT  488
            |||  ||||| || ||||||||| || | ||||||||||||  |||||  |||||| |||
Sbjct  467  ACCCCAATATCATACCTACACACCTTATGGTTATTGGACACCCCATGGCCCTTACTACGT  526

Query  489  GAACCAAC  496
            ||||||||
Sbjct  527  GAACCAAC  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32551727256


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5