BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487975 Length=673 Score E Sequences producing significant alignments: (Bits) Value AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 566 1e-160 > AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:3640026-3640876 REVERSE LENGTH=851 Length=851 Score = 566 bits (306), Expect = 1e-160 Identities = 430/488 (88%), Gaps = 15/488 (3%) Strand=Plus/Plus Query 16 tttctcgattgttgggactttctttttact-tttttcttcttaagactttGTGACAGAGA 74 ||||| |||||||| |||||||| | ||| |||| || || | || |||||||||||| Sbjct 55 TTTCT-AATTGTTGGAACTTTCTTGTCACTAATTTT-TT-TTGATAC-TTGTGACAGAGA 110 Query 75 CATGGCTCAACATTACGCGAACCAAAACGTCGACACGAGATACACCAAGATATACGTGGG 134 | |||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||| Sbjct 111 CGTGGCTCAACATTACGCGAACGAAAACGTTGACACTAGATACACTAAGATATACGTGGG 170 Query 135 AGGTTTGCCTTGGAAAACAAGAAATGAAGGTTTGAAAAGCTACTTCCAACAATTTGGAGA 194 |||| |||||||| |||||||||| |||||||||| ||| |||||| ||||||||||||| Sbjct 171 AGGTCTGCCTTGGGAAACAAGAAACGAAGGTTTGAGAAGTTACTTCGAACAATTTGGAGA 230 Query 195 AATTATCCATGTTAATGTGGTTTGTGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT 254 ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 231 TATTATACATGTTAATATGGTTTGCGATAGAGAAACGGGACGATCAGAGGGTTATGGTTT 290 Query 255 TGTCACGTTTAGAGATGTTGAATCTGCAACGAGAGTTTGCCAGAATCCAAAACCGGTCAT 314 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 291 TGTCACGTTTAGAGATGCTGAATCTGCAACGAGAGCTTGCCAGAATCCAAAACCGGTCAT 350 Query 315 AGACGGACGAGAGGCCAAGTGCAACCTTGCTTATATTGGTGCTAGGGTTAACAATAACCA 374 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 351 AGACGGACGAGAGGCCAAGTGCAATCTTGCTTATATTGGTGGTAGGGTTAACAATAACCA 410 Query 375 AAACGCCCAACAAGTAGAAGT-CTA--T--GTACCCAACTGGAACCAGTTTC-AGTTTGC 428 ||||||||||||| | |||| ||| | |||||||||||| ||||||||| | | Sbjct 411 AAACGCCCAACAACAACAAGTACTACCTATGTACCCAACTGGGACCAGTTTCCAC----C 466 Query 429 ACCAGAATATGATCCCTACACACTTTGTTGTTATTGGACACAACATGGTTCTTACTGCGT 488 ||| ||||| || ||||||||| || | |||||||||||| ||||| |||||| ||| Sbjct 467 ACCCCAATATCATACCTACACACCTTATGGTTATTGGACACCCCATGGCCCTTACTACGT 526 Query 489 GAACCAAC 496 |||||||| Sbjct 527 GAACCAAC 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32551727256 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5