BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487976
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11416.1 | Symbols: | unknown protein; Has 30201 Blast hits... 233 4e-61
> AT5G11416.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3642780-3643010
REVERSE LENGTH=231
Length=231
Score = 233 bits (126), Expect = 4e-61
Identities = 161/177 (91%), Gaps = 6/177 (3%)
Strand=Plus/Plus
Query 20 AGAAACAGAGCGCTAAAGCCACCGTCGTGCCACTGTCTCTCCTCACCCTTCTCTCTTATT 79
|||||||||||||| |||| ||||||||||||||||||||| |||||| | |||| ||
Sbjct 60 AGAAACAGAGCGCTTAAGCTACCGTCGTGCCACTGTCTCTCATCACCC-T-TCTC---TT 114
Query 80 ACATACAACACTTCTTTTACCCTCTCACGGCCCCATGTCCCGACTT-CACCACTTATAAC 138
|||| ||||||||||||||| |||||||| |||||| |||||||| |||||||||||||
Sbjct 115 ACATGCAACACTTCTTTTACTATCTCACGGGCCCATGACCCGACTTACACCACTTATAAC 174
Query 139 AAAGCAGACACAATTTATGGATCATATAATATATCATTCAATGACAAATTATTATAG 195
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 175 AAAGCAGACACAATTTATGGATCATATATTATATCATTCAATGACAAATTCTTATAG 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5