BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487976 Length=195 Score E Sequences producing significant alignments: (Bits) Value AT5G11416.1 | Symbols: | unknown protein; Has 30201 Blast hits... 233 4e-61 > AT5G11416.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:3642780-3643010 REVERSE LENGTH=231 Length=231 Score = 233 bits (126), Expect = 4e-61 Identities = 161/177 (91%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 20 AGAAACAGAGCGCTAAAGCCACCGTCGTGCCACTGTCTCTCCTCACCCTTCTCTCTTATT 79 |||||||||||||| |||| ||||||||||||||||||||| |||||| | |||| || Sbjct 60 AGAAACAGAGCGCTTAAGCTACCGTCGTGCCACTGTCTCTCATCACCC-T-TCTC---TT 114 Query 80 ACATACAACACTTCTTTTACCCTCTCACGGCCCCATGTCCCGACTT-CACCACTTATAAC 138 |||| ||||||||||||||| |||||||| |||||| |||||||| ||||||||||||| Sbjct 115 ACATGCAACACTTCTTTTACTATCTCACGGGCCCATGACCCGACTTACACCACTTATAAC 174 Query 139 AAAGCAGACACAATTTATGGATCATATAATATATCATTCAATGACAAATTATTATAG 195 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 175 AAAGCAGACACAATTTATGGATCATATATTATATCATTCAATGACAAATTCTTATAG 231 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8651832372 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5