BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487980

Length=818
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11440.1 | Symbols: CID5, IPD1 | CTC-interacting domain 5 | ...   941    0.0  
  AT3G10810.1 | Symbols:  | zinc finger (C3HC4-type RING finger) ...  56.5    4e-07


> AT5G11440.1 | Symbols: CID5, IPD1 | CTC-interacting domain 5 
| chr5:3652714-3654202 REVERSE LENGTH=901
Length=901

 Score =  941 bits (509),  Expect = 0.0
 Identities = 627/678 (92%), Gaps = 32/678 (5%)
 Strand=Plus/Plus

Query  148  GTTCAAGTGTCAATGCCGAAGAAATCCTCTGAAATGGCTTACAAGCAGATCAGGGATGAT  207
            ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  205  GTTGAAGTGTCAATGCCGAAGAAATCCTCTGAAATGGCTTATAAGCAGATCAGGGATGAT  264

Query  208  GATTTGGATTTGGAGATGGATATTGACATGGATATTGAATACCTTCTTGTGACTTTCTCT  267
            ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  265  GATTTGGATTTGGAGATGGATATAGACATGGATATTGAATACCTTCTTGTCACTTTCTCT  324

Query  268  GGTCTCTCACAAGAGTCTATTACTGATGTTTACCTCGCGAATGGCGGTGATCTTGAAGCA  327
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  325  GGTCTCTCACAAGAGTCTATCACTGATGTTTACCTCGCTAATGGCGGTGATCTTGAAGCA  384

Query  328  ACCATTGAGATGCTGAATCAGCTTGAGATATACAGTACTGAATCGGAGGAAAATCTGCCA  387
            ||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct  385  ACCATTGAGATGCTGAATCAGCTTGAGATATACAGCACTGAATCTGAAGAAAACCTGCCA  444

Query  388  GAGACACTTGATATTGGGGATATCTCTGAGTCAGGGCCTTCAACCTCAAAAGCTACTGAA  447
            |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  445  GAGACACTTGATATTGGGGATATCTCTGAGTCAGGGCCTTCAACATCAAAATCTACTGAA  504

Query  448  GTCGCTGCATCCACATCATCGGTTATCCCTAATGCACCTGTATCGGCCTGAT-TCATGAA  506
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  505  GTCGCTGCATCCACATCATCGGTTATCCCTAATGCACCTGTATCGGCCTGATCTCATGAA  564

Query  507  TCC-TTAGTTGTGAAGTTTTTGCTTCTTCtttttttttttttttttttGTATTGGTTTGC  565
            ||| |||||||||||| ||||||||||||      || ||||| |||||| |||||||||
Sbjct  565  TCCTTTAGTTGTGAAG-TTTTGCTTCTTC------TTCTTTTTCTTTTGTTTTGGTTTGC  617

Query  566  ATACCCTTAATAAGTACAGCAATGGGGGTTAGGGTATGGTATCAATGAAGTTGATGGTAT  625
            |||||| |||||||||||| |||||||| ||   | | ||||||||||||||||||||||
Sbjct  618  ATACCCATAATAAGTACAGTAATGGGGG-TA---T-T-GTATCAATGAAGTTGATGGTAT  671

Query  626  CTAAGAGAAATGATGATATGTGAGTAGTTGGAAAATGTATAGTTTTGGAAGTTCAAATCT  685
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  672  CTAAGAGAAATGATGATATGTGAGTAGTTGGAAAATGTATAGTTTTGGAAGTTCAAATCT  731

Query  686  GAGTGGTGTGTTGTTGTTGGGCAGATTAGATTAGTGTCTGGTCTTTT--GACCCCTTTTT  743
            ||||||||||||||| | |||||||||||||||||  ||||||||||  |||||||||||
Sbjct  732  GAGTGGTGTGTTGTT-T-GGGCAGATTAGATTAGT--CTGGTCTTTTTTGACCCCTTTTT  787

Query  744  GT-TT--GCAGCTCCATCTGTGGATTGGATTTTCCTAAGAATAATACTGATAAATGATAA  800
             | ||  |||||||||||||||||||||||||||||| |||||||| |||||  |  |  
Sbjct  788  TTATTTTGCAGCTCCATCTGTGGATTGGATTTTCCTATGAATAATA-TGATA--T--T--  840

Query  801  TGATATGTTTATTATGGT  818
             |||||||||||||||||
Sbjct  841  -GATATGTTTATTATGGT  857


 Score =  180 bits (97),  Expect = 2e-44
 Identities = 113/120 (94%), Gaps = 3/120 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGCCAGGAGCATTTGCATTGAATCCACATGCAGCATCGTATGTACCAATCTCCAAA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  88   ATGAAGCCAGGAGCATTTGCATTGAATCCACATGCAGCATCGTATGTACCAATCTCCAAA  147

Query  61   AGAATGGATTGTGGTGGTGGTGGTGATGATGGTTTGATGTTTGCAGCAAAGTCCCCCACG  120
            ||| |||||| |||||| ||||   ||||||||||| |||||||||||||||||||||||
Sbjct  148  AGAGTGGATTATGGTGGCGGTG---ATGATGGTTTGGTGTTTGCAGCAAAGTCCCCCACG  204


> AT3G10810.1 | Symbols:  | zinc finger (C3HC4-type RING finger) 
family protein | chr3:3381848-3384509 REVERSE LENGTH=1773
Length=1773

 Score = 56.5 bits (30),  Expect = 4e-07
 Identities = 33/34 (97%), Gaps = 1/34 (3%)
 Strand=Plus/Minus

Query  67    GATTGTGGTGGTGGTGGTGATGATGGTT-TGATG  99
             |||||||||||||||||||||||||||| |||||
Sbjct  1351  GATTGTGGTGGTGGTGGTGATGATGGTTGTGATG  1318



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39835678571


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5