BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487982
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11460.1 | Symbols: | Protein of unknown function (DUF581) ... 2017 0.0
> AT5G11460.1 | Symbols: | Protein of unknown function (DUF581)
| chr5:3656811-3658931 REVERSE LENGTH=1439
Length=1439
Score = 2017 bits (1092), Expect = 0.0
Identities = 1346/1460 (92%), Gaps = 52/1460 (4%)
Strand=Plus/Plus
Query 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATATAGACGAAAGACTTCTCATT 60
||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 GAGAGAGAGAAGAGTACCTCACAAGACTTGCACAGATATAT--ACGTAAGACTTCTCATT 58
Query 61 G--t-c-ttctt-t-c-t-t-cttcttc-tccttcttcttcAAC-TTTACCTCAGAAGGA 109
| | | ||||| | | | | ||||| | ||||||||||||||| ||||||||||||| |
Sbjct 59 GTCTGCTTTCTTCTCCTTCTCCTTCTCCTTCCTTCTTCTTCAACTTTTACCTCAGAAGCA 118
Query 110 AGAACAAGTCCTGAAGAAATTTCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 169
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGAACAAGTCCTGAAG-AA--CCCAGATCATCAATCATGTCTCAGCATTCCAACTATCAA 175
Query 170 ATGGCCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGGGATTAAG-AGCCA 228
||| |||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 176 ATGACCACTGCTTCTGATTACTATTCGACAAAACCGGTCTTGTCAGCGATT-AGAAGCCA 234
Query 229 CAAACTCATCTCTAGTTTGTTTGAAGGAAAGTCTCCATCTGATTGTGAATCAGCTTGGAG 288
|||||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||||
Sbjct 235 CAAACTCATCTCTAGTGTGTTTGAAGGAAAGTGTCCATCTGACTATGAATCAGCTTGGAG 294
Query 289 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCGACTTTAGGGAACCCTTTTGGTGCTTC 348
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| |
Sbjct 295 CCCAACTTCTCCTTTGGATTTCAGATTGTTCTCCACTTTAGGGAACCC-TTT--TGCTGC 351
Query 349 TTCTTCTTCTTTGAGGTCAATCTGGAAAGGGAAACAAAAGAGCTGGGATTCTGGTAAAGT 408
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 352 TTCTTCTTC---GAGGTCAATCTGGAGAGGGAAACAAAGGAGCTGGGATTCTGGTAAAGT 408
Query 409 TGGCTTGAGCATTGTTCATTCTCTTGTTGATG---ATCACACTGATTCATCATCAAGGAT 465
|||||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 409 AGGCTTGAGCATTGTGCATTCTCTTGTTGATGATCATCACACTGATTCATCAGCAACGAT 468
Query 466 TGTTCTACCATCACCGGATAGTAAAAACATAATCTTTGGGTCCTTGATGAGAAGTGGCCA 525
|||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 469 TGTTTTACCATCACCGGATAGTAAAAACATAATCTTTGGATCTTTGATGAGAAGTGGCCA 528
Query 526 GAAACCTCATCTACTCTCTCAACCCCTTGCCAAAGCTTTGATCCCCAAGAATGATATACC 585
||||||||||||||||||||||||| || ||||||||||||| |||||| ||| ||||||
Sbjct 529 GAAACCTCATCTACTCTCTCAACCCTTTACCAAAGCTTTGATGCCCAAGGATGTTATACC 588
Query 586 CAATGTTGTTTTTGAGATTGGACCTGATGTGCTTGATGTGGTTGAGCTACAAAAATCTGG 645
|||| ||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||
Sbjct 589 AAATGCTGTTTTTGAGATTGGACATGATGTGATTGATGTGCTTGAGCTTCGAAAATCTGG 648
Query 646 CTCGGTC---GCTGCTTACTGCTCCGGTGCTGGGAACTTCAGTGTGAACAACAATGCTTG 702
||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 649 CTCCGTCGATGCTGCTTACTGTTCCGGTGCTGAGAACTTCAGTGTGAACAACAATGCTTG 708
Query 703 TCAGGTGATCAAGCAAGCCCCAGGATCACTTAATGGGGGTACAGGAAGTGACATTGAGAC 762
|||||||| |||||||| |||||||||||||||||||||||| | ||||||||| ||||
Sbjct 709 TCAGGTGACCAAGCAAGACCCAGGATCACTTAATGGGGGTACTGAAAGTGACATGGAGAT 768
Query 763 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CTCAGAGGACTACACTTGTGTTATTTCACATGGTCCTAACCCCAAAACCACCCATTTTTA 828
Query 823 CGGGGATCAGGTTCTGGAGTCCGTAGAGAACAATGAGTTGAAGAACAGTTGTTGC-AGTA 881
||||||||||||| |||||||||||||| | | |||||||||||| |||||||| || |
Sbjct 829 CGGGGATCAGGTTATGGAGTCCGTAGAGCGCGAGGAGTTGAAGAACCGTTGTTGCAAG-A 887
Query 882 ACAAGAAAAAGAGCATTTTTGCAGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 941
|| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 888 ACGAGAAAGAGAGCATTTTTGCTGTTGCTCCTCTCGACTTGACAACACCTGTTGATGTGT 947
Query 942 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGTTATGGG-G 1000
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 948 TACCTCCCAAAGACTTCTTGAGCTTCTGCTACGGCTGTAGCAAGAAGTTGGGTATGGGAG 1007
Query 1001 AAAGATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1060
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 AA-GATATATACATGTACAGTGGATACAAAGCGTTCTGCAGTAGTGAGTGCCGTTCAAAG 1066
Query 1061 GAGATAGATCGGGATGAGAAAATGGAGGATG-A-A-GAAGAAG---CAATCAAGTCTGCC 1114
|||||||||| ||||||| |||||||||||| | | ||||||| |||||||||||| |
Sbjct 1067 GAGATAGATCTGGATGAGGAAATGGAGGATGGAGATGAAGAAGAAGCAATCAAGTCTGTC 1126
Query 1115 TCGTCTTCAGAGAAGGACCTGTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1174
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 TCGTCTTCAGACAAGGA---GTCTAAGAAGAAGAGTAACGGTGTGTTCTTCACCGTGGGC 1183
Query 1175 TGATTCCAATGCTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1234
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TAATTCCAATACTCCCACCATTTCCATGATCGATTTGAGTCCATGAAAAGAGGAAAAGTA 1243
Query 1235 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAA-GAGCTGTTGGTTTCTTTAAACCGAGGC 1293
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1244 GAAGCTTGAGCTGATCATCTGTTCAAGAAAAAAGAGCTGTTGGTTTCTTTAAACTGAGGC 1303
Query 1294 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCT-ACCTAACaaaaaaa--- 1349
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1304 GGCCATGGATGATCATTTTTGTATATTGCTTGTGCTTCTGCTTACCTAACAAAAAAAAAA 1363
Query 1350 TACTTTTGGTCTCATCTCTCATGGTTTGGGTGGGTGATTGAGTGGAACTATGGCTCTTGT 1409
||||||||||||||||||||||||||| |||||||||||| || |||||||| ||||
Sbjct 1364 TACTTTTGGTCTCATCTCTCATGGTTTTGGTGGGTGATTG-GTC---CTATGGCTATTGT 1419
Query 1410 TATGGATATTTATAATTATG 1429
||||||||||||||||||||
Sbjct 1420 TATGGATATTTATAATTATG 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5