BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487983
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11470.1 | Symbols: | bromo-adjacent homology (BAH) domain-... 2953 0.0
> AT5G11470.1 | Symbols: | bromo-adjacent homology (BAH) domain-containing
protein | chr5:3662717-3667923 REVERSE LENGTH=2413
Length=2413
Score = 2953 bits (1599), Expect = 0.0
Identities = 1910/2052 (93%), Gaps = 54/2052 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCAGTAACATCTGAAGGCTTAGAATTTAAGTGGGGTAAAAAGAAATGTGTT 60
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 100 ATGGAAGAATCTGTAGCATCTGAAGGCTTAGAATTTAAGTGGGGTAAAAAGAAAGGTGTT 159
Query 61 GGTGGGAAAAAGAAAGATGTCCAATTCTATGAATCTTTCATCTATGATGGCGATGAGTAC 120
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||
Sbjct 160 GGTGGGAAAAAGAAAGATGTCCAGTTCTATGAATCTTTCACCTATGATGGCGATGAATAC 219
Query 121 CATCTTTATGACTGTGTCTTAGTTGGCGATGCCAGTGAACCAGACTCTACTGAACCCTTC 180
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 220 CGTCTTTATGACTGTGTCTTAGTTGGCAATGCCAGTGAACCAGACTCTACTGAACCCTTC 279
Query 181 ATTGGCATGATCATAAAAATTTGGGAACACGCTAATAAGCATATCCCAAGGAAAGTCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 280 ATTGGCATGATCATAAAAATTTGGGAACACGCTAATAAGCATATCCCAAAGAAAGTCAAG 339
Query 241 CTTCTCTGGTTCTTTAAACCTTCTGAGATTGCGCCATATCTTGAAGGAGTCCCAG-ATGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 340 CTTCTCTGGTTCTTTAAACCTTCTGAGATTGCGCCATATCTTGAAGGAGTCCC-GAATGT 398
Query 300 ACTTGCCAATGAACTGTTTTTAGCATCGGGTGAAGGTCTTGGCCTCGCTAATATCAACCA 359
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 399 ACTTGCCAATGAAGTGTTTTTAGCATCGGGTGAAGGTCTTGGCCTTGCTAATACCAACCA 458
Query 360 ATTGGAAGCAATCGGGGGAAAATGCTCTGTTCTATGCATTTCAAAGGACAAAAGAAATCC 419
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 459 ATTGGAAGCAATCGGTGGAAAATGCTCTGTTCTATGCATTTCAAAAGACAAAAGAAATCC 518
Query 420 ACAACCCTCGGATGAAAAAATCAACTCAGCAGACTTCGTGTTTCGCCGATCATTTGATGT 479
||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 519 ACAACCCTCGGATGAAAAATTCAACTCAGCGGACTTCGTGTTTTGCCGAGCATTTGATGT 578
Query 480 TAGG-AGTTGCAAAGTTGTGGATACGATTGATGATAAAATTGCTGGAGTTGATGTTAAAT 538
| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 579 T-GGAAGTTGCAAAGTTGTGGATACGATTGATGATAAGATTGCTGGAGTTGACGTTAAAT 637
Query 539 TTATCTTTAACAGAGCGTGCTCTGAGAAAGAAGCAACTGCGGTGCAGAATATTGAAGCAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 TTATCTTTAACAGAGCGTGCTCTGAGAAAGAAGCAACTGCGGTGCAGAATATTGAAGCAG 697
Query 599 ACGTAAATGGGAATTCAGATAGTTTGAAACCAAATGGTCC-TT---T-----AGCTAGTG 649
||||||||||||| |||||||||||||||||||||||||| || | ||||||||
Sbjct 698 ACGTAAATGGGAAGTCAGATAGTTTGAAACCAAATGGTCCTTTAGCTAGGGGAGCTAGTG 757
Query 650 GTTCAGGTAGGAAAATTGAAGACAGC-CATTTTGAATCTTCTGACTGTAAA-AAAGGCAG 707
|||||| ||||||||| ||||||||| | |||||||||||||||||||||| ||| |||
Sbjct 758 GTTCAGTTAGGAAAATCGAAGACAGCGC-TTTTGAATCTTCTGACTGTAAAGAAA-ACAG 815
Query 708 TAATGGTTGTATTCAAGAGAAAGAAAAAGGTCACTATCAACTGGCTACaaaaaaaGCTAC 767
||||||||| | |||||||||||||||||||||| ||||| |||| ||||||| ||||
Sbjct 816 TAATGGTTGCAAAGAAGAGAAAGAAAAAGGTCACTACCAACTCGCTATAAAAAAATCTAC 875
Query 768 AGTTGCAGAAGAAAGGTCCAACAAGGATTCTGGCTCTAGGGGAAATCATTTTGATGGCAA 827
| |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct 876 ACTTGCAGAAGAAAGGTCTAACAAGGATTCTGGCTCTAGGGGAAATCATTATAATGGCAA 935
Query 828 AGCTCAAGAAAGTGAAGTTAAAAAACAGTTAACTAAACAAAAATCTATGCCT-GCAGAAG 886
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 936 AGATCAAGAAAGTGAAGTTAAAAAACAGTTAACTAAACAAAAATCTATGCCTGGC-GAAG 994
Query 887 AAAGATATAGTAACTCGTGTGAAGCTTCTGGCTCCAGGATAATTCATTCCATTTCCAGGA 946
|||||||||||||||| | |||||||||||||||||||| ||||||||||||||| | ||
Sbjct 995 AAAGATATAGTAACTCTTTTGAAGCTTCTGGCTCCAGGACAATTCATTCCATTTCAAAGA 1054
Query 947 AAGCTCAAGTAAATGATGTTAAAAAACAGTTGACTAAACAAAAATCTATGCCCGCTGAAG 1006
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1055 AAGCTCAAGAAAATGATGTTAAAAAGCAGTTGACTAAACAAAAATCTATGCCCGCTGGAG 1114
Query 1007 AAAGATATGGTAAAGACTTGAGTAGATTGGATGACAGGCCTCTGAAGAAACAGAAACGAG 1066
|||||||| || |||| | |||| ||||||||||||||||||||||||||||||||| |
Sbjct 1115 AAAGATATAGTCAAGAGTCGAGTGGATTGGATGACAGGCCTCTGAAGAAACAGAAACTTG 1174
Query 1067 ATGGTTCTGTTACAATACCAGATGGACGGAATACAACCCTTTTGCAGAACATTACTTCTG 1126
|||||||||||||| ||| ||||||| || |||||||| |||||||||||||||||||||
Sbjct 1175 ATGGTTCTGTTACAGTACGAGATGGATGGGATACAACCATTTTGCAGAACATTACTTCTG 1234
Query 1127 ATGGTAAAAAGGATACAGGATCTTTCAAGAGACCTAGAGACAAAGTGACTATAGAGGAAG 1186
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1235 ATGGTAAAAAGGATACAGGATCTTTTAAGAGACCTAGAGACAAAGTGACTATAGAGGAAG 1294
Query 1187 TCCCTCCCGAGAAGCGCAGCTTTGTTAAGAAGCGGGATCTGGGAGTGTCAGTATCTGAAG 1246
|||||||||| |||||||||||||||||||| || ||||| | |||||||||||||||||
Sbjct 1295 TCCCTCCCGAAAAGCGCAGCTTTGTTAAGAACCGAGATCTTGTAGTGTCAGTATCTGAAG 1354
Query 1247 GAAAAACTACAAAAACTGTAACTGAAAAAGGTTTATCCAAGAAGCCCAGCTTTGGTCATG 1306
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 1355 GAAAAACTACAAAAACTGTAACTGAAAAAGGTATATCCAAGAAGCCCAGCTTTGGACGTG 1414
Query 1307 CTGAAGACAAGATGTTGGCAGATGATAATGAAAGAAACTATCAAGTAACTGAAGTGTGCC 1366
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CTGAGGACAAGATGTCGGCAGATGATAATGAAAGAAACTATCAAGTAACTGAAGTGTGCC 1474
Query 1367 GAAGGCCGGATGCTATTTCAGAGCGTGTTGTAAAATCTATAGATGCAAGGATGTGGTTTT 1426
|||||||||||||| | | ||||||||||||| |||||||||||||||||||||
Sbjct 1475 GAAGGCCGGATGCT----C-G----TGTTGTAAAATCTTTAGATGCAAGGATGTGGTTTT 1525
Query 1427 GCAAGAACACAATTCTAAAAGGAGAAGTTTTGTTTTACAGTCCTTCACACTGTATGTT-- 1484
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1526 GCAAGAACACAATTCTAAAAGGAGCAGTTTTGTTTTACAGTCCTTCACACTGTATGTTGT 1585
Query 1485 AT--TT-T--TGAT-TCCT-T-ATTTATT-TCAGGGAAAAA-GT-A--A-A-TGGTTCCG 1529
|| || | |||| | || | ||| || ||| | | || | | | || || |
Sbjct 1586 ATAGTTGTAGTGATGTTCTGTCATTC-TTCTCATCTTATTATGTTACCACAATGCTT--G 1642
Query 1530 G-AGTC-TT---CCTTGGGAAGAAAGTATGAGGGAAGCAGaaaaaaaaGGGACTGTGGTA 1584
| | | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GTAA-CATTGAGCCTTGGGAAGAAAGTATGAGGGAAGCAGAAAAAAAAGGGACTGTGGTA 1701
Query 1585 CTTCTTCAAAACTTGGATCCTACTTATACATCTGATGAAGTGGAGGATATAGTCTATTCT 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 CTTCTTCAAAACTTGGATCCTACTTATACATCTGATGAAGTGGAGGATATAGTCTATTCT 1761
Query 1645 GCTTTGAACGAGCAATGCGAAGCGAGGATGATAGAGCGTACATCAGTCACTATTCCTCAT 1704
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1762 GCTTTGAACCAGCAATGCGAAGCGAGGATGATAGAGCGTACATCAGTCACTATTCCTCAT 1821
Query 1705 GTTGGTGAAGCTTTGGTCATTTTCAAAACAAGAGAAGTTGCAGAAAGGGTGATTAGAAGA 1764
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1822 ATTGGTGAAGCTTTGGTCATTTTCAAAACAAGAGAAGTTGCAGAAAGGGTGATTAGAAGA 1881
Query 1765 CTAGATGAGGGATGCTTGTTGCTATCAAGTGGGAGGCCCCTTGTTGCTTCTTTCGCTAAG 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1882 CTAGATGAGGGATGCTTGTTGCTATCAAGTGGGAGGCCCCTTGTTGCTTCTTTCGCTAAG 1941
Query 1825 ATTACTCCACCAGGGAAGCCGTCATCATTCTCAGGCCATATCAAACTACACAAAACTCAA 1884
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1942 ATTACTCCACCAGGGAAGCCGTCATTATTCTCAGGCCATATCAAACTACACAAAACTCAA 2001
Query 1885 ACGCGACGAGAGATGAGAGATGCTGTGGCTACATCACATTGTTCTCAGCCGAACAACCTT 1944
|||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||||
Sbjct 2002 ACGCGACGGGAGATGAGAGATGCCGTGGCTACATCACATTCTTCTCAGCCTAACAACCTT 2061
Query 1945 GAATTTGACATGGCCATGGAATGGTGTTTGCACCAAGCCAGACACGAGCAGGCGTCTGAA 2004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2062 GAATTTGACATGGCCATGGAATGGTGTTTGCACCAAGCCAGACACGAGCAGGCGTCTGAA 2121
Query 2005 AGTGTGTCTAAG 2016
||||| ||||||
Sbjct 2122 AGTGTATCTAAG 2133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103513523790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5