BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487985
Length=2821
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11490.2 | Symbols: | adaptin family protein | chr5:3671788... 4405 0.0
> AT5G11490.2 | Symbols: | adaptin family protein | chr5:3671788-3676452
FORWARD LENGTH=2918
Length=2918
Score = 4405 bits (2385), Expect = 0.0
Identities = 2576/2669 (97%), Gaps = 10/2669 (0%)
Strand=Plus/Plus
Query 1 AGTGAACCAAAATCTCTCTCAATTTTATCACCCCGTGCTTCTGATCTCGGTGGGATTCTT 60
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 31 AGTGAACCAAAATCTCTCTCAAATTTATCACCCCGTGCTTCTGATCACGGTGGGATTCTC 90
Query 61 TCCGATCGGTAACATCTCGCCGTTCATACTCCGGTGGATCTCACCACAGCGTAATAATTT 120
|||||||||| |||| ||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 91 TCCGATCGGTGACATATCGTGGTTCATACTCCGGTGGATCT---CACGGCGTAATAATTT 147
Query 121 ATCGTATCTGAATCGCAATCTTATTAGCCATGGCTCCTCCGGCCGCTTCGCAGCGTTATC 180
||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 148 ATCATATCTGAATCGCAATCTTATTAACCATGGCTCCTCCGGCCGCTTCACAGCGTTATC 207
Query 181 CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 CGTCACCGTCCCAACCTTCAGGGAAAAGCGAAGTGTCAGATCTGAAAACCCAGCTTCGCC 267
Query 241 AACTAGCTGGAAGTAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG 300
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGCTAGCTGGAAGCAGAGCTCCAGGAGTTGATGATTCCAAACGTGACCTCTACAAGAAAG 327
Query 301 TAATATCGTACATGACTATTGGTATTGACGTCTCATCTGTATTTGGAGAAATGGTCATGT 360
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 328 TAATATCGTACATGACTATTGGCATTGACGTCTCATCTGTATTTGGAGAGATGGTCATGT 387
Query 361 GCTCTGCAACATCTGACATTGTCCTGAAGAAGATGTGTTATCTTTATGTTGGCAACTATG 420
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 388 GCTCGGCAACATCAGACATTGTCCTGAAGAAGATGTGTTATCTTTACGTTGGAAACTATG 447
Query 421 CAAAAGGAAACCCTGATCTTTCTCTTTTGACGATCAATTTTCTCCAAAGAGATTGCAAAG 480
|||| || || ||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 448 CAAAGGGCAATCCTGATCTTTCTCTTTTGACGATTAATTTTCTGCAAAGGGATTGCAAAG 507
Query 481 ATGAGGACCCTATGATCCGTGGGCTTGC-TCTGAGGAGCTTGTGTTCCTTACGAGTGCCA 539
|||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct 508 ATGAGGACCCTATGATCCGTGGGCTTGCAT-TGAGGAGCTTGTGTTCTTTACGAGTGCCA 566
Query 540 AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAACAGCTAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 567 AACCTTGTGGAGTATCTGGTTGGTCCCTTGGGGAGCGGGCTCAAGGACAATAATAGCTAT 626
Query 600 GTGAGAACAATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCAGCCTCAACATGC 659
|| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 627 GTTAGAACTATCGCTGTTACTGGAGTACTAAAGCTTTATCACATCTCACCCTCAACATGC 686
Query 660 ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 ATTGATGCCGATTTTCCTGCAACGTTGAAAAGTTTGATGCTTCATGATTCAGATGCTCAG 746
Query 720 GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGCTTAGAAGCAAGCCACTCT 779
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 747 GTAGTTGCCAATTGCCTGTCTGCACTTCAAGAAATTTGGAGTTTAGAAGCAAGCCACTCT 806
Query 780 GAGGAAGCATGCCGGGAAAAGGAATCCTTGCTTAGCAAGCCAGTTATATATTATTTCTTG 839
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 807 GAGGAAGCATGCCGGGAAAAGGAGTCCTTGCTCAGCAAGCCAGTTATATATTATTTCTTG 866
Query 840 AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 AATCGGATCAAGGAATTCAATGAATGGGCACAATGTCTTATACTTGAGTTGGCAGTAAAA 926
Query 900 TATGTGCCCTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTT 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 TATGTGCCGTCAGATAGTAATGATATTTTTGACATTATGAATCTGTTGGAAGACAGACTG 986
Query 960 CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGtttttttACAGTTAACACTC 1019
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 987 CAGCATGCCAATGGAGCTGTTGTCTTGGCAACAGTCAAAGTGTTTTTACAATTAACTCTC 1046
Query 1020 TCCATGACAGATGTTCATCAACAGGTATATGAACGTATTAAATCCCCACTTCTAACTCTC 1079
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1047 TCCATGACTGATGTTCATCAACAGGTATATGAGCGTATTAAATCCCCACTTCTAACTCTT 1106
Query 1080 GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCCTGAGCCACCTTCATCTTTTGGTT 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1107 GTCAGTTCTGGAAGTCCAGAGCAATCGTATGCAATCTTGAGCCACCTTCATCTTTTGGTT 1166
Query 1140 GTTCGTGCGCCATTCATCTTTGCCGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA 1199
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1167 GTTCGTGCGCCATTCATCTTTGCTGCAGACTATAAGCATTTCTACTGCCAGTACAATGAA 1226
Query 1200 CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 CCATCATATGTCAAAAAGTTGAAGCTTGAGATGTTGACTGCTGTTGCAAACGAGAGCAAC 1286
Query 1260 ACTTACGAAATTGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG 1319
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 ACTTACGAAATCGTGACGGAACTGTGTGAGTATGCTGCAAACGTTGATATTGCAATTGCG 1346
Query 1320 AGGGAGTCAATTCGGGCAGTTGGGAAGATTGCTTTGCAACAGTATGATGTCAATGCGATT 1379
|| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1347 AGAGAGTCAATTCGAGCAGTTGGAAAGATTGCTTTGCAACAGTATGATGTAAATGCGATT 1406
Query 1380 GTTGATAGACTTCTTCAATTCCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG 1439
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTTGATAGACTTCTTCAATTTCTGGAGATGGAAAAGGACTATGTGACCGCTGAAACTTTG 1466
Query 1440 GTTCTTGTGAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGATTGCATTTCTGTT 1499
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1467 GTTCTTGTAAAGGACCTTCTAAGGAAGTATCCACAATGGAGCCATGACTGCATTTCTGTT 1526
Query 1500 GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GTTGGGGGTATCAGCAGCAAAAATATCCAGGAACCGAAAGCCAAGGCGGCTCTTATATGG 1586
Query 1560 ATGTTGGGTGAGTATGCTCAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA 1619
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 ATGTTGGGTGAGTATGCACAGGACATGAGTGATGCTCCTTATGTTTTGGAGAATCTGATA 1646
Query 1620 GAAAACTGGGAGGAAGAGCATTCAGCTGAGGTTCGGTTACATCTCTTAACTGCAGCAATG 1679
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1647 GAAAACTGGGAGGAAGAGCATTCAGCCGAGGTTCGGTTACATCTCTTAACTGCGGCAATG 1706
Query 1680 AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAATAGCTCTAGCTGCA 1739
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1707 AAATGCTTTTTCAAGAGGGCACCTGAGACTCAGAAAGCCCTAGGAACAGCTCTAGCTGCA 1766
Query 1740 GGTATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG 1799
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 GGCATTGCTGATTTTCACCAGGATGTTCATGACCGAGCCTTGTTCTACTATCGGGTTCTG 1826
Query 1800 CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC 1859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 CAATACGATGTACACGTGGCAGAACGTGTTGTTAGTCCTCCAAAACAGGCGGTTTCAGTC 1886
Query 1860 TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTATATTTGACGAGTTTAACAGCCTT 1919
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1887 TTTGCTGACACTCAAAGCAGTGAAATCAAAGACCGTGTATTTGACGAGTTTAACAGCCTT 1946
Query 1920 TCTGTGATATACCAGAAGCCATCTTACATGTTCACGGATAAGGAACACCGAGGACCCTTT 1979
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1947 TCTGTGATATACCAGAAGCCATCTTACATGTTTACGGATAAGGAACACCGAGGACCCTTT 2006
Query 1980 GAGTTTTCAGACGAACTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT 2039
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 GAGTTTTCTGACGAAGTTGGAAATATTTCCATCACACCTGAAGCCTCCAGCGACATTGTT 2066
Query 2040 CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTGTTGACGAGAAGGAT 2099
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2067 CCAGCTCAGCAATATGAGGCAAATGACAAGGACCTGCTTCTAGGTATTGACGAGAAGGAT 2126
Query 2100 GACAATAAAGGACTTTCCAATAACAATGGTTCCGCTTACACGGCTCCTTCATTAGAAAGC 2159
|| ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2127 GAAAATAAAGGAGTTTCCAATAACAATGGTTCTGCTTACACGGCCCCTTCATTAGAAAGC 2186
Query 2160 TCCTCTAGTATAAGCTCACAAATGCAAGAGCTTGCAATCTCCGGGCCC-GCCACATCCGC 2218
||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2187 TCCTCTAATATAACCTCACAAATGCAAGAGCTTGCAATCTCCGG-CCCTGCCACATCCGC 2245
Query 2219 AACTACCCCACAATCAAGCTTTGGGTTTGATGATCTATTTGGTTTGGGTTTATCTACAGC 2278
|||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 2246 AACTACCCCACAATCA---TTTGGTTTTGATGATCTCTTTGGTTTGGGTTTATCAACCGC 2302
Query 2279 TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACCCAAGAGCTGCTCTAGATCC 2338
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2303 TCCTGCTCCAACACCATCACCGCCTCTTTTGAAACTTAACGCAAGAGCTGCTTTAGATCC 2362
Query 2339 AGGTGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCATTAACACAGGAGTGTTCTGT 2398
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2363 AGGCGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCACTAACACAGGAGTGTTCTGT 2422
Query 2399 GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAGTCACTTATCAGACACATGCAGAG 2458
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 2423 GAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAATCACTTATCAAACACATGCAGAG 2482
Query 2459 TCATTCCATTCACTGTATTGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT 2518
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2483 TCATTCCATTCACTGTATCGCATCGGGCGGTCAATCTCCAAACTTCAAGTTCTTCTTTTT 2542
Query 2519 CGCTCAAAAGGAATCAGAACCATCGAACTATCTCGCTGAGTGCATCATAAACACTTCATC 2578
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2543 CGCTCAAAAGGAATCAGAACCATCGAACTATCTCACTGAGTGTATCATAAACACTTCATC 2602
Query 2579 CGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTCTCAGGCATTCACAAC 2638
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 2603 AGCCAAAGCTCAGATAAAAGTGAAAGCAGACGAGCAGAGTACGTGTCAAGCATTCACAAC 2662
Query 2639 CGTATTTGAAACAGCCTTGTCCAAATTTG 2667
|||||||||||||||||||||||||||||
Sbjct 2663 CGTATTTGAAACAGCCTTGTCCAAATTTG 2691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140166438742
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5