BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487987
Length=3333
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein 3... 5040 0.0
> AT5G11510.1 | Symbols: MYB3R-4, AtMYB3R4 | myb domain protein
3r-4 | chr5:3679808-3684877 FORWARD LENGTH=3406
Length=3406
Score = 5040 bits (2729), Expect = 0.0
Identities = 3072/3234 (95%), Gaps = 38/3234 (1%)
Strand=Plus/Plus
Query 120 GATTGGATTTACTTTGGACATTTTGGTCTCTCCAGTTTCTGGGTATCGTCATTGTCTCTC 179
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 169 GATTGGATTTACTTTGGGCATTTTGGTCTCTCCAGTTTCTGGGTATCGTCGTTGTCTCTC 228
Query 180 TTCGATTTCTG-ATTAGTTCCATTTCTAAAGCTCGCATAGAGAAGAAAGGCAACGTATGG 238
| |||||| || | | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 229 TCCGATTTATGAACCACTTCCATTTCTGAAGCTCGCATAGAGAAGAAAGGCAACGTATGG 288
Query 239 GAATTGGGGTAACTATTTTTGCATTTTCATTGACAAGGTATGGAAAG-TGAGTCTTCAAC 297
|||||||||| ||||||||||||||||||||||| || ||||| ||| |||||||| |
Sbjct 289 GAATTGGGGTGACTATTTTTGCATTTTCATTGACTAGTTATGG-AAGCTGAGTCTT---C 344
Query 298 TATCTCAGCCCCTCACGAAGGGATCCCGAAATCGCGTCACGGGAGGACTAGTGGCCCTGC 357
| | ||||||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 345 -A----A-CCCCTCAGGAACGGATCCCGAAATTGCGTCACGGGAGGACTAGTGGCCCTGC 398
Query 358 AAGACGTTCAACTCGAGGTCAATGGACAGCTGAGGAGGATGAGATCTTGAGAAAAGCTGT 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 399 AAGACGTTCAACTCGAGGCCAATGGACAGCTGAGGAGGATGAGATCTTGAGAAAAGCTGT 458
Query 418 CCATAGTTTCAAAGGAAAAAACTGGAAGAAGATAGCTGAATACTTCAAGGATCGAACTGA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CCATAGTTTCAAAGGAAAAAACTGGAAGAAGATAGCTGAATACTTCAAGGATCGAACTGA 518
Query 478 TGTCCAGTGCCTCCACAGGTGGCAGAAGGTCCTTAATCCTGAACTTGTTAAAGGACCGTG 537
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 519 TGTCCAGTGCCTCCACAGGTGGCAAAAGGTCCTTAATCCTGAACTTGTTAAAGGGCCCTG 578
Query 538 GACGAAGGAGGAAGATGAAATGATCGTTCAGTTAATCGAAAAATATGGGCCGAAGAAGTG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 GACGAAGGAGGAAGATGAAATGATCGTTCAGTTAATCGAAAAATATGGGCCGAAGAAGTG 638
Query 598 GTCCACTATTGCTCGATTTTTACCTGGCCGTATTGGAAAGCAATGTAGAGAGAGGTGGCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 GTCCACTATTGCTCGATTTTTACCTGGCCGTATTGGAAAGCAATGTAGAGAGAGGTGGCA 698
Query 658 CAATCATCTCAATCCTGCCATAAACAAAGAAGCTTGGACTCAAGAAGAAGAGCTGGTTCT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 699 CAATCATCTCAATCCTGCCATAAACAAAGAAGCTTGGACTCAAGAAGAAGAGCTGCTTCT 758
Query 718 GATTCGTGCTCATCAAATATACGGTAATAGATGGGCAGAGTTAACAAAGTTCTTGCCTGG 777
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 759 GATTCGTGCTCATCAAATATATGGTAATAGATGGGCTGAGTTAACAAAGTTCTTGCCTGG 818
Query 778 AAGGTCGGATAATGGAATTAAAAATCACTGGCACAGTTCAGTCAAGAAGAAACTTGATTC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAGGTCGGATAATGGAATTAAAAATCACTGGCACAGTTCAGTCAAGAAGAAACTTGATTC 878
Query 838 CTACATGTCGTCTGGCATTTTGGATCAGTACCAAGCCATGCCTCTAGCTCCTTATGAGAG 897
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 CTACATGTCGTCTGGCCTTTTGGATCAGTACCAAGCCATGCCTCTAGCTCCTTATGAGAG 938
Query 898 AAGTTCCACATTACAATCAAGTTTTATGCAAAGCAATATAGATGGAAATGGCTGCCTAAA 957
|||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 939 AAGTTCTACATTACAATCAACTTTTATGCAAAGTAATATAGATGGAAATGGCTGCCTAAA 998
Query 958 CGGACAGGAAGAGAACGAAATAGACAGCCGTCAAAATTCAAGCATGGTTGGCTGCTCGCT 1017
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 999 TGGACAGGCAGAGAACGAAATAGACAGCCGTCAAAATTCAAGCATGGTTGGCTGCTCACT 1058
Query 1018 ATCTGCAAGAGATTTTCAAAATGGAGCCATAAATATGGGGCATGATTTCCACCCCTGTGG 1077
|||||||||||| |||||||||||| | || ||||| |||||||||||||||||||||||
Sbjct 1059 ATCTGCAAGAGACTTTCAAAATGGAACTATCAATATTGGGCATGATTTCCACCCCTGTGG 1118
Query 1078 AAACTCTCAAGAGAATGAGCAAACTGTATATCATTCAGATCAGTATTT-CTATCCGGAAT 1136
|||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||
Sbjct 1119 AAACTCTCAAGAGAATGAGCAAACTGCGTATCATTCAGAGCAGT-TTTACTATCCGGAAT 1177
Query 1137 TGGAAGATATCTCAGTCTCCATCTCAGAAGTCTCTTATGACATGGAAGACTGTTCACAGT 1196
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1178 TGGAGGATATCTCAGTCTCCATCTCCGAAGTCTCTTATGACATGGAAGACTGTTCACAGT 1237
Query 1197 TTCCTGATCATAATGTCTCAACTTCTCCGAGCCAGGATTACCAATTTGATTTTCAGGAAC 1256
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1238 TTCCTGATCATAATGTCTCGACTTCTCCAAGCCAGGATTACCAATTTGATTTTCAGGAAC 1297
Query 1257 TCTCGGATATTTCACTGGAGATGAGACATGATATGTCAGAGATACCAATGCCATACATGA 1316
| || ||||| ||||| |||||||||||| |||||||||| |||||||||||||||| |
Sbjct 1298 TATCAGATATATCACTCGAGATGAGACATAATATGTCAGAAATACCAATGCCATACACCA 1357
Query 1317 AGGAGAGCAAGGAATCTACTCTGGGAGCTCCAAACTCCACATTAAATATTGATGTGGCTA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 AGGAGAGCAAGGAATCTACTCTGGGAGCTCCAAACTCCACATTAAATATTGATGTGGCTA 1417
Query 1377 CTTACACCAACTCAGCAAATGTTTTGACACCTGAAACGGAATGTTGCAGGGTACTTTTCC 1436
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CTTACACCAACTCAGCAAACGTTTTGACACCTGAAACGGAATGTTGCAGGGTACTTTTCC 1477
Query 1437 CTGATCAAGAGAGTGAAGGGCACAGTGTTTCTAGATCTTTGACCCAAGAGTCAAACCAGG 1496
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1478 CTGATCAAGAGAGTGAAGGGCACAGTGTTTCTAGATCTTTGACCCAAGAGCCAAACGAGT 1537
Query 1497 TTGACCAGGCAGACCGCCGAGATCCTATCTTGTGTGCATCAGCTTCAGACAGACAGATAT 1556
|| |||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1538 TTAACCAGGTAGACCGTCGAGATCCTATCTTGTATTCATCAGCTTCAGACAGACAGATAT 1597
Query 1557 CAGAAGCTACAAAATCTCCTACGCAGAGCTCTTCTTCAAGGTTCATTGCAACGGCCGCCT 1616
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1598 CAGAAGCTACAAAATCTCCTACGCAGAGCTCTTCTTCAAGGTTCACTGCAACGGCCGCCT 1657
Query 1617 CAGGCAAAGAAACTCTTCGGCCAGCTCCCTTAATCATATCGCCCGACAAGTATACCAAGA 1676
|||| |||| |||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 1658 CAGGAAAAGGAACTCTTCGGCCAGCTCCCTTAATCATATCACCAGACAAGTATAGCAAGA 1717
Query 1677 AGTCATCTGGATTGATATGCCATCCTTTTGAGGCAGTACCAAAGTGCACAACAAATGGAA 1736
||||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||
Sbjct 1718 AGTCATCTGGATTGATATGTCATCCCTTTGAGGTAGAACCAAAGTGCACAACAAATGGAA 1777
Query 1737 ATGGTAGCTTCATATGCATCGATGATTCATCAATCTCCACTTGTGTTGATGAAGGAACCA 1796
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||| ||||
Sbjct 1778 ATGGTAGCTTCATATGCATCGGTGATCCATCAAGCTCCACTTGTGTTGATGAAGGGACCA 1837
Query 1797 ATAACTCCAGCGAAGAAGATCAATCATATCATGTGAGTGATCCCAAAAAGTTGGTTCCAG 1856
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1838 ATAACTCCAGCGAAGAAGATCAATCATATCATGTGAATGATCCCAAAAAGTTGGTTCCAG 1897
Query 1857 TGAATGATTTTGCTTCTCTGGCGGAAGATAGGCCACACTCTCTTCCTAAGCATGAGCCAA 1916
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1898 TGAATGATTTTGCTTCTCTGGCAGAAGATAGGCCACACTCTCTACCTAAGCATGAGCCAA 1957
Query 1917 ACATGACAAGCGAGCAGCATCATGAGGATACGGGGGCATCATCTAGTCTTGGGTTTCC-A 1975
||||||||| |||||||||||||||||||| |||||||||||| |||||||| ||||| |
Sbjct 1958 ACATGACAAACGAGCAGCATCATGAGGATATGGGGGCATCATCAAGTCTTGG-TTTCCCA 2016
Query 1976 AGCTTGGACCTACCTGTGTTCAGCTGTGATCTTCTACAATCCAAAAACGATCCTCTACAC 2035
||||| ||| ||||||| || | |||||||||||||||||| ||||| ||||||||||||
Sbjct 2017 AGCTTCGACTTACCTGTTTTTAACTGTGATCTTCTACAATCTAAAAATGATCCTCTACAC 2076
Query 2036 GATTATAGCCCTCTTGGCATACGCAAGCTACTGATGTCCACCATGACGTGCATGAGTCCC 2095
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 GATTATAGCCCACTTGGCATACGCAAGCTACTGATGTCCACCATGACGTGCATGAGTCCC 2136
Query 2096 CTTCGACTGTGGGAATCTCCCACTGGGAAAAAGACGTTGGTTGGTGCACAGTCAATCCTG 2155
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 CTTCGACTGTGGGAATCTCCCACTGGGAAAAAGACGTTGGTTGGTGCACAGTCAATCCTT 2196
Query 2156 AGGAAACGAACTCGTGATCTGCTGACACCGTTATCTGAGAAAAGAAGTGATAAAAAGCTT 2215
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 AGGAAACGGACCCGTGATCTGCTGACACCGTTATCTGAGAAAAGAAGTGATAAAAAGCTT 2256
Query 2216 GAAATTGATATAGCAGCCAGTCTGGCAAAAGATTTTTCACGTCTAGATGTGATGTTTGAT 2275
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2257 GAAATTGATATAGCAGCCAGTCTGGCAAAAGACTTTTCACGTTTAGATGTGATGTTTGAT 2316
Query 2276 GAAAGTGAGAATCGACAATCTA-TCTTCGGAAATAGCACTGGTGTCATTCATGGAGATAG 2334
|| | ||||||||| ||||||| | || |||||||||||||||||||| |||||||||||
Sbjct 2317 GAGACTGAGAATCGGCAATCTAATTTT-GGAAATAGCACTGGTGTCATCCATGGAGATAG 2375
Query 2335 AGAAAACCACTTTCAAATTTT-AAGTGGAGAAGGTGAAGAAA--ATTGG-AAGCCTTCTT 2390
||||||||||||||| ||||| || |||||| ||||||||| | ||| ||||||||||
Sbjct 2376 AGAAAACCACTTTCACATTTTGAA-TGGAGACGGTGAAGAATGGAGTGGCAAGCCTTCTT 2434
Query 2391 CACTCTTTAGTCACAGAATGCCAGAAGAAACCATGCATATCAGAAAATCGCTTGAGAAAG 2450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2435 CACTCTTTAGTCACAGAATGCCAGAAGAAACCATGCATATCAGAAAATCGCTTGAGAAAG 2494
Query 2451 CAGATCAAACTTGCATGGAGGCAAATGTCAGGGAAAAGGATGATTCTGAACAAGATGTTG 2510
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2495 TAGACCAAATTTGCATGGAGGCAAATGTCAGGGAAAAGGATGATTCTGAACAAGATGTTG 2554
Query 2511 AGAATGTTGAATTTTTCTCTGGTGTTCTTTCTGAGCACAACACCGGCAAGCCAGTCCTGT 2570
||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 2555 AGAATGTTGAATTTTTCTCTGGTATTCTTTCTGAGCACAATACCGGTAAGCCAGTCCTGT 2614
Query 2571 CTTCTCCTGGTCAATCAGTTACTAAAGCAGAGAAGACGCAAGTTTCAACCCCAAGAAATC 2630
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2615 CTACTCCTGGTCAGTCAGTTACTAAAGCAGAGAAGGCGCAAGTTTCAACCCCAAGAAATC 2674
Query 2631 AATTGCATAGAACTCTCATGGCTACGTCTAACAAAGAACATCATTCCCCTTCAAGTGTTT 2690
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2675 AGTTGCAAAGAACTCTCATGGCTACGTCTAACAAAGAACATCATTCCCCTTCAAGTGTTT 2734
Query 2691 GTTTAGTGATTAATTCGCCTTCTCGAGCAAGAAGCAAGGAGGGTCATCTTGTTGACAATG 2750
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 2735 GTTTAGTGATTAATTCGCCTTCTCGAGCGAGAAACAAGGAGGGTCATCTTGTTGACAATG 2794
Query 2751 GGACAAGCAATGAGAATTTTAGCATATTCTGTGGAACTCCATTCAGGAGAGGTCTTGAAT 2810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2795 GGACAAGCAATGAGAATTTTAGCATATTCTGTGGAACTCCATTCAGGAGAGGTCTTGAAT 2854
Query 2811 CTCCCTCAGCCTGGAAATCTCCATTTTACATAAACTCTCTCTTGCCCAGCCCAAGGTTTG 2870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2855 CTCCCTCAGCCTGGAAATCTCCATTTTACATAAACTCTCTCTTGCCCAGCCCAAGGTTTG 2914
Query 2871 ACACAGATATTA-CTATCGAGGACATGGGCTACATTTTCAGTCCTGGGGAGAGAAGC-A- 2927
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2915 ACACAGAT-TTAACTATCGAGGACATGGGCTACATTTTCAGTCCTGGGGAGAGAAGCTAC 2973
Query 2928 -------TAGGAGTGATGACACAGATAAATGAACATACAAGTGCATTTGCAGCTTTTGCA 2980
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 GAGAGCATAGGAGTGATGACACAGATAAATGAACATACAAGTGCATTTGCAGCTTTTGCA 3033
Query 2981 GATGCAATGGAAGTTTCAATTTCACCAACTAATGATGATGCGAGGCAGAAGAAGGAATTG 3040
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3034 GATGCAATGGAGGTTTCAATTTCACCTACTAATGATGATGCGAGGCAGAAGAAGGAATTG 3093
Query 3041 GATAAAGAGAACAATGATCCTCTACTGGCGGAGCGTCGAGTGCTGGACTTCAACGATTGC 3100
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3094 GATAAAGAGAATAATGATCCTCTACTGGCGGAGCGTCGAGTGCTGGACTTCAACGATTGC 3153
Query 3101 GAGTCTCCCATCAAAACAACAGAAGAAGTCTCATCCTACCTCTTGAAGGGATGTAGGTAA 3160
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3154 GAGTCTCCAATCAAAGCAACAGAAGAAGTCTCATCCTACCTCTTGAAGGGATGTAGGTAA 3213
Query 3161 AATGCCAAAAGCTCATACATAATATGCAAAATGCAT-ATACATGAACAATGTATAAAAAT 3219
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 3214 AATGCCAAAAGCTTATACATAATATGCAAAATGCACCATACATGAACAATGTATAAATAT 3273
Query 3220 GTATGTGCATCTTTTATGAATTATCCCTGGCTGGATCATAtttttttttctttgtttctt 3279
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 3274 GTATGTGCATCTTTTATGAATTATCCCTGGCTGGATCA-ATTTTTTTT-CTCTGTTTCTT 3331
Query 3280 tttATTGGATCAGTTGGAGTGAATTTATGTAAAATTCTGTGTTCAATATATATA 3333
|||| ||||||| |||||||||||||||||| | ||||||||||||||||||||
Sbjct 3332 TTTAATGGATCAATTGGAGTGAATTTATGTAGA-TTCTGTGTTCAATATATATA 3384
Score = 126 bits (68), Expect = 1e-27
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 1 TTTCGAATTTCCGCCATTCTTGTTTTGAAAATAGCTCTGCCGACCGTTTAGATTTCTCTC 60
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 13 TTTTGAATTTCCGCCAGTCTTGTTTTG-AAATAGCTCTGCCGACCGTTTAGATTTCTCTC 71
Query 61 ATT-ATCTATCTTCTCTGG-AAAATTTT 86
|| ||||||||||||||| ||||||||
Sbjct 72 TTTTATCTATCTTCTCTGGGAAAATTTT 99
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165851913558
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5