BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487989
Length=1499
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11520.1 | Symbols: ASP3, YLS4 | aspartate aminotransferase ... 2362 0.0
> AT5G11520.1 | Symbols: ASP3, YLS4 | aspartate aminotransferase
3 | chr5:3685089-3687764 REVERSE LENGTH=1561
Length=1561
Score = 2362 bits (1279), Expect = 0.0
Identities = 1416/1481 (96%), Gaps = 14/1481 (1%)
Strand=Plus/Plus
Query 1 AAACACAAAAATGAAAACTACTGATTTCTCTTCTTCTTCCTCTTCCGATCGCAGGATCGG 60
||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||
Sbjct 34 AAAAACAAAAATGAAAACTACTCATTTCTCTTCCTCTTCTTCTTCCGATCGCAGGATCGG 93
Query 61 TGCTCTGCTCCGTCATCTCACTGCCGGCTCAGATTCGGATC-ATCTGAGCTC-CGTTTAT 118
|||||||||||||||||||| | |||||||||||||||| | | |||||||| | |||||
Sbjct 94 TGCTCTGCTCCGTCATCTCAATTCCGGCTCAGATTCGGA-CAACCTGAGCTCTC-TTTAT 151
Query 119 GCCTCTCCGACATCGGGAGTCACCGGCGGTTCTGTTTTCGCTCATCTTGTTCAAGCTCCT 178
|| |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||
Sbjct 152 GCATCTCCGACATCGGGAGGCACCGGTGGTTCTGTTTTCTCTCATCTTGTTCAAGCTCCA 211
Query 179 GAGGATCCTATTCTTGGGGTGACAGTTGCATATAACAAAGATCCTAGCCCAGTTAAGCTG 238
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 212 GAGGATCCTATTCTTGGGGTGACAGTTGCATACAACAAAGATCCTAGCCCAGTTAAGCTG 271
Query 239 AATTTGGGAGTTGGTGCTTACCGAACTGAGGAGGGAAAACCTTTGGTTCTTAATGTTGTG 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 AATTTAGGAGTTGGTGCTTACCGAACTGAGGAGGGAAAACCTTTGGTTCTTAATGTTGTG 331
Query 299 AGGAAAGCTGAGCAGCAGCTTATCAATGACAGAACAAGAGTTAAGGAGTATCTTCCCATT 358
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 332 AGGAAAGCTGAGCAGCAGCTTATCAATGACAGAACAAGAATCAAGGAGTATCTTCCCATT 391
Query 359 GTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATATTAGGCGCTGACAGTCCT 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 392 GTTGGATTGGTTGAGTTCAACAAGTTAAGCGCTAAGCTCATACTAGGCGCTGACAGTCCT 451
Query 419 GCTATTCGGGAGAATCGGATTACCACCGTGGAGTGTTTGTCTGGTACTGGTTCTCTGAGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 GCTATTCGGGAGAATCGGATTACCACCGTGGAGTGTTTGTCTGGTACTGGTTCTCTGAGA 511
Query 479 GTTGGAGGGGAGTTTTTGGCCAAGCATTATCATCAGAAAACAATTTATATTACTCAGCCA 538
|||||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||
Sbjct 512 GTTGGAGGAGAGTTTTTGGCTAAACATTATCATCAGAAAACAATTTACATCACTCAGCCA 571
Query 539 ACATGGGGAAATCATCCAAAGATTTTCACCCTCGCCGGTTTGACAGTGAAAACTTACCGC 598
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 572 ACATGGGGAAATCATCCAAAGATTTTCACGCTCGCTGGTTTGACAGTGAAAACTTACCGA 631
Query 599 TACTACGATCCAGCGACGCGTGGGTTGAACTTTCAAGGTTTGTTAGAAGACCTTGGTGCT 658
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 632 TACTACGATCCAGCGACGCGTGGGTTGAACTTTCAAGGTTTATTAGAAGACCTTGGTGCT 691
Query 659 GCCCCAGCTGGTTCTATAGTACTTCTCCATGCCTGTGCCCATAACCCTACTGGTGTTGAT 718
||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 692 GCCGCACCTGGTTCTATAGTGCTTCTCCATGCCTGTGCCCATAACCCTACTGGTGTTGAT 751
Query 719 CCAACCATTCAACAATGGGAGCAAATCAGGCAGTTGATGCGATCAAAGGGATTGATGCCC 778
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 752 CCAACCATTCAACAATGGGAGCAAATCAGGAAGTTGATGCGATCAAAGGGATTGATGCCC 811
Query 779 TTCTTTGATAGTGCTTATCAGGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCG 838
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 TTCTTCGATAGTGCTTATCAGGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCT 871
Query 839 ATTAGGATGTTTGTTGCTGATGGCGGAGAATGCCTCGTTGCTCAAAGTTATGCGAAAAAC 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 872 ATTAGGATGTTTGTTGCTGATGGCGGAGAATGCCTCGTTGCTCAAAGTTATGCGAAGAAC 931
Query 899 ATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTGTATGCAAATCAGCAGATGTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ATGGGACTCTATGGAGAACGAGTTGGAGCTCTCAGCATTGTATGCAAATCAGCAGATGTT 991
Query 959 GCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCAAGTCCTCCA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 992 GCGGGGAGAGTTGAAAGCCAACTGAAACTAGTGATAAGGCCAATGTACTCGAGTCCTCCA 1051
Query 1019 ATTCATGGTGCATCAATTGTGGCTGTAATTCTTCGCGACAAGAATTTGTTCAACGAATGG 1078
|| |||||||||||||| ||||||||||| || || ||||||||||||||||||||||||
Sbjct 1052 ATCCATGGTGCATCAATCGTGGCTGTAATCCTCCGTGACAAGAATTTGTTCAACGAATGG 1111
Query 1079 ACTCTGGAACTGAAGGCCATGGCTGATCGTATCATCAGCATGAGAAAACAGCTCTTT-GA 1137
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 1112 ACTCTGGAACTGAAGGCCATGGCTGATCGTATCATCAGCATGAGGAAACAGCT-TTTCGA 1170
Query 1138 GGCATTACGTACTCGAGGCACTCCTGGAGACTGGAGTCACATCATAAAGCAGATCGGTAT 1197
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1171 GGCATTACGTACTCGAGGCACTCCTGGAGACTGGAGTCACATCATAAAGCAGATTGGTAT 1230
Query 1198 GTTTACATTCACAGGGTTAAACCCAGCTCAAGTCTCCTTCATGACTAAAGAGTACCACAT 1257
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GTTTACCTTCACAGGGTTAAACCCAGCTCAAGTCTCCTTCATGACTAAAGAGTACCACAT 1290
Query 1258 CTACATGACATCCGATGGGAGGATAAGCATGGCTGGTCTGAGCTCGAAGACTGTACCGCA 1317
|||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1291 CTACATGACATCTGACGGGAGGATAAGCATGGCTGGTCTGAGTTCGAAGACTGTACCTCA 1350
Query 1318 CCTTGCAGACGCTATTCACGCTGTTGTCACCAAAGCCGTCTGAGAAACTGAACACCACCA 1377
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 CCTTGCAGACGCTATCCATGCTGTTGTCACCAAAGCCGTCTGAGAAACTGAACACCACCA 1410
Query 1378 TGACCACTTTGGTTAAAGCTTCATAATAAAGATTTTGTGCTTTTCTTTCTATTATAGCAT 1437
|||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1411 TGAC-ACC------AAAGCTTCATAATAAAGATTTTGTTCTTTTCTTTCTATTATAGCAT 1463
Query 1438 TTCCGGCAGTGACAAGATAAAATGTCGTTACtattactatt 1478
||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1464 TTCCGGCAGTGACAAGATAAA-TGTCGTTACTATTATTATT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73945402785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5