BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487991
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11540.1 | Symbols: | D-arabinono-1,4-lactone oxidase famil... 2634 0.0
> AT5G11540.1 | Symbols: | D-arabinono-1,4-lactone oxidase family
protein | chr5:3703002-3704981 REVERSE LENGTH=1758
Length=1758
Score = 2634 bits (1426), Expect = 0.0
Identities = 1651/1761 (94%), Gaps = 9/1761 (1%)
Strand=Plus/Plus
Query 1 ATGCGTCACTCTCATACTCT-C--CATTTCTCAATTCTATCTTTCTTCGTCACTATATGG 57
|||||| ||||||||||||| | || ||||||||||||||||||||||| || ||||||
Sbjct 1 ATGCGTTACTCTCATACTCTCCAGCAGTTCTCAATTCTATCTTTCTTCGTTACAATATGG 60
Query 58 ACCGTCCAATCCGTACCACCACAACCACCGGTTCGATGCGACCAAACCGGCTGCACCGTC 117
||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 ACCGTTCAATCAGTACCACCACAACCACCGATTCGATGCGACCAAACCGGCTGCACCGTC 120
Query 118 TCCAACGCGTACGGCACGTGGCCTGACCGCAAAACCTGCCACGCGGCTAACGTCACATAT 177
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TCCAACGCGTACGGCACGTGGCCTGACCGCAAAACCTGTCACGCGGCTAACGTCACATAC 180
Query 178 CCAACGACGGAGGAGGAGCTTCGTAAAGCCGTGGCTTACGCGGCTGAGCATACTCTCAAA 237
|||||||||||||| || |||||||||||||| ||||||||||||||||| | |||||||
Sbjct 181 CCAACGACGGAGGAAGACCTTCGTAAAGCCGTTGCTTACGCGGCTGAGCACAATCTCAAA 240
Query 238 GTCAAAACCGTCACCAAATTCTCTCACACTATACCGAAACTCGCTTGTCCTTCCGGTTCA 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 241 GTCAAAACCGTCACCAAATTCTCTCACACCATACCGAAACTCGCTTGTCCTTCAGGTTCA 300
Query 298 GACGCAATGCTAATTAGTACGTCGAAATACAATTCGGTTATCGAGATTGAACCAGACCGG 357
|||||| |||||||||||||||||||||| ||||||||||||||||||||||| || | |
Sbjct 301 GACGCATTGCTAATTAGTACGTCGAAATATAATTCGGTTATCGAGATTGAACCGGAACTG 360
Query 358 TTGACGGTTACGGCTGATTCTGGAGTTTCGTTGAGAGAGCTGATCGATAAAGTTGAAGGA 417
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTAACGGTCACGGCTGATTCTGGAGTTTCGTTGAGAGAGCTGATCGAGAAAGTTGAAGGA 420
Query 418 GCTGGGTTTAGCATCGCAACGTCACCGTACTGGGAAGGAGTGAGTATCGGTGGGCTGATT 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTGGGTTTAGCATCGGAACGTCACCGTACTGGGAAGGAGTGAGTATCGGTGGGCTGATT 480
Query 478 AGCACAGGGTCACACGGAAGCTCGTGGTCGGGACGAGGCGGTTCGGTTCATGACCATGTT 537
|| || || || ||||| || |||||||| |||||||| |||||||||||||||||||||
Sbjct 481 AGTACTGGCTCCCACGGGAGTTCGTGGTCTGGACGAGGTGGTTCGGTTCATGACCATGTT 540
Query 538 GTCGGAATCAGCCTTGTGGTTCCGGCGAATTCA-TCGGAAGGTTTCGCCAAGGTTGTTAG 596
||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||
Sbjct 541 GTCGGAATCAGCCTTGTGGTTCCGGCGAAC-CAATCAGAAGGTTTCGCGAAGGTTGTTAG 599
Query 597 ACTCGAAGAAGGGAGAGATGATAAGCTTCTTAACGCCGTTAAAGTGTCGTTGGGTGTTTT 656
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 ACTCGAAGAAGGGAGAGATGATACGCTTCTTAACGCCGTTAAAGTGTCGTTGGGTGTTTT 659
Query 657 AGGAGTCATCTCAAAGGTGAAACTTTCGATAGAGAAAGCATTTAAGAGAAGTATGACGTA 716
||||||||| |||||||| || |||||||||||||||||||||||||||||| |||||||
Sbjct 660 AGGAGTCATTTCAAAGGTTAAGCTTTCGATAGAGAAAGCATTTAAGAGAAGTGTGACGTA 719
Query 717 TAACTTCACATCTGACGTAGCACTTGAAGACATTTTTATGGAGCATGGGAAGACATTCGA 776
|||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 720 CAACTTCACATCTGACGTAGCACTTGAAGACATTTTTATGGAGCATGGGAAAAAATACGA 779
Query 777 ATTCGGAGACATAACGTGGTATCCTTCCAGAAAAACTGCGGTTTACCGTTACGATATCCG 836
||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 780 ATTCGGAGACATAACTTGGTATCCTTCTAGAAAAACTGCTGTTTACCGTTACGATATCCG 839
Query 837 ATCACCGGTCAACGTCTCCGGCAACGGAGTCAACGACTTTACT-GGTTTTCAGTCTAATC 895
| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 840 AGCACCGGTCAATGTCTCCGGCAACGGAGTCAACGACTTT-CTTGGTTTTCAGTCTAATC 898
Query 896 CTATCTTGATCTCTAGAGGGGTTCGAGCATTAGAGAAGGGACTTGAATCTACCAAGAACG 955
||||||||||||||| |||||| ||||||||||||||||| ||||||||| |||||| |
Sbjct 899 CTATCTTGATCTCTAAAGGGGTACGAGCATTAGAGAAGGGGTTTGAATCTAGCAAGAATG 958
Query 956 AGAATGGAAAATGCACCACTGCGGATACTACGTTGGCCTACAAGAAACTAA-CTGGGAAC 1014
|||||||||||||||||||||| |||||||||||||| ||||||||| ||| | ||||||
Sbjct 959 AGAATGGAAAATGCACCACTGCAGATACTACGTTGGCATACAAGAAATTAATC-GGGAAC 1017
Query 1015 GGTCTAAAGAACAATGGTTTAATCTTTACTGGATATCCGGTTATCGGGAGACAAGGCAAG 1074
||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1018 GGTTTAAAGAATAGTGGTTTAATCTTTACTGGATATCCGGTTATCGGAAGACAAGGCAAG 1077
Query 1075 ATCCAAACTTCCGGGTCTTGCCTCTACTCATCTTCAATTAGAATTGATGTGGCTTGCGCA 1134
||||| ||||| |||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1078 ATCCAGACTTCTGGGTCTTGTCTTTACTCATCTTCAATTAGAATTGATGTCGCTTGCGCA 1137
Query 1135 TGGGACCCGAGATATAGTGGTCTTTTCTTCTATGAAACGACAGCTATATTCCCCGTTTCT 1194
|||||||||||||||| ||||||||||| ||||||||||| || |||||||| ||||||
Sbjct 1138 TGGGACCCGAGATATAACGGTCTTTTCTTTTATGAAACGACTGCAATATTCCCAGTTTCT 1197
Query 1195 AGGTTTAGAGATTTTCTCCTCGACGTGAAGAAGCTACGAGACTTGAAACCCGCAAGACTA 1254
||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 1198 AGGTTTAGAGATTTTCTTCTCGACGTGAAGAAGCTACGAGACATGAAACCCGAAAGATTG 1257
Query 1255 TGCGGGATTGATATCTATAACGGTATCCTCATACGTTTCATCAAGGGCTCAAAGGCTTAT 1314
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1258 TGCGGGATCGATATCTATAACGGTATCTTCATACGTTTCATAAAGGGCTCAAAGGCTTAT 1317
Query 1315 CTTGGCCAGACAGAGGATTCTGTGGTTATTGACTTTAATTATTACCGAGCGGACGATGAG 1374
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 1318 CTTGGCCAGACAGAGGATTCAGTGGTCATTGACTTTAATTATTACCGAGCGGATGATGAG 1377
Query 1375 TTGACCCCGAGGTTGAACCAAGATGTGATGGAGGAGATGGAGCAGATGGCGTTTGTTAAA 1434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1378 TTGACCCCGAGGTTGAACCAAGATGTGATGGAGGAGATGGAGCAGATGGCGTTTGTCAAA 1437
Query 1435 CACGGCGCAAAGCCGCATTGGGGGAAGAATAGGAAAGTGGGTTTCTTTGGCGTGAAGAAA 1494
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1438 CACGGCGCAAAGCCGCATTGGGGGAAGAATAGGAAAGTGGGTTTCTTCGGCGTGAAGCAA 1497
Query 1495 AAGCTTGGACCTAATTTTGATAGATTCTTGGAAGTGAAGAACAAGTTAGATCCTAAGAAG 1554
||| |||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1498 AAGATTGGACCTAACTTTGATAAATTCTTGGAAGTAAAGAACAAGTTAGATCCTAAGAAG 1557
Query 1555 ATGTTCTCTAGTGAATGGTCTGATGAGATTCTCTTTGGAATAGAAGCTTCCAAGTATGAC 1614
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1558 ATGTTCTCTAGTGAATGGTCTGATGAGATTCTCTTAGGAACAGAAGCTTCCAAGTATGAC 1617
Query 1615 GGATGTGCCCTGGAAGGAAATTGTGTGTGTTCAGAAGACAGACATTGTAGCCCTTCCAAA 1674
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1618 GGATGTGCCTTGGAAGGAAATTGTGTGTGTTCAGAAGAAAGACATTGTAACCCTTCCAAA 1677
Query 1675 GGTTACTTTTGTAAGCAAGGCCTTGTTTATACACAAGCTAGGGTTTGCAGATTCTCTCCA 1734
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1678 GGTTACTTTTGTAAGGAAGGCCTTGTTTATACACAAGCTAGGGTTTGCAGATTCTCGCCA 1737
Query 1735 GCTCAAGTTCTAGTGACGTAA 1755
||||||||| |||||| ||||
Sbjct 1738 GCTCAAGTTATAGTGATGTAA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5