BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487992 Length=1225 Score E Sequences producing significant alignments: (Bits) Value AT5G11550.1 | Symbols: | ARM repeat superfamily protein | chr5... 1690 0.0 > AT5G11550.1 | Symbols: | ARM repeat superfamily protein | chr5:3708009-3709246 REVERSE LENGTH=1238 Length=1238 Score = 1690 bits (915), Expect = 0.0 Identities = 1144/1249 (92%), Gaps = 38/1249 (3%) Strand=Plus/Plus Query 1 GGTGCGAACCAATAATTTTCCTCCTATTTTAAAA-AGAGACGCTTCCCTTCACTTCACTC 59 ||| |||| |||| |||||| ||||| ||||||| ||||||||||||||||||||||||| Sbjct 1 GGTTCGAATCAATTATTTTCTTCCTA-TTTAAAACAGAGACGCTTCCCTTCACTTCACTC 59 Query 60 CACTTCACTT---A-----A-A-AG--T-CC-AGTGAGCGATGATGAAAGCAAACCAGAA 105 |||||||||| | | | || | || |||||||||||||||||||||||||||| Sbjct 60 CACTTCACTTGAAAGTCCCACACAGTCTCCCTAGTGAGCGATGATGAAAGCAAACCAGAA 119 Query 106 ACCGAAACCACACGCGCCGCCACGTCCTCTCTTCTCATGTGGCTTCTTCCGCCGCTGCAC 165 ||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 120 ACCGAAACCCCACGCGCCACCGCGTCCTCTCTTCTCCTGTGGCTTCTTCCGCCGCTGCAC 179 Query 166 ACAGTCCGTACTCAGTCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAACCCACCAC 225 ||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 180 ACAATCCGTCCTCAGCCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAAGCCACCAC 239 Query 226 CACATCATCCTCCTCTTCTTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 285 ||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CACTTCCTCCTCATCTTCCTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 299 Query 286 CTTCCCTCATCACCTTGATCAAActccatccaccgctcctccacct-c-c-tccaccacc 342 ||| |||||||| ||||||||||||||||||||||||||||| ||| | | |||||| || Sbjct 300 CTTTCCTCATCATCTTGATCAAACTCCATCCACCGCTCCTCCTCCTCCTCATCCACCTCC 359 Query 343 tccacctccgcctcttccggtaaccaccactctccaAGAAACCTTCCAGATCGCAGAGCT 402 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 360 TCCACCACCGCCTCTTCCGGTCACCACCACTCTCCAAGAAACCTTCCAGATCGCAGAGCT 419 Query 403 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTTCAGCTACTCGAGCGTGT 462 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 420 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTACAGCTACTCGAGCGGGT 479 Query 463 CGTCGTACCCGACCCGCCTTCTGATCCGACTTGTCCACCGGGTCTCATGCGATGCCTCGT 522 |||||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 480 AGTCGTACCTGACCCGCCATCTGATCCGACTTGTCCACCGGGTCTCATGCGAGGTCTCGT 539 Query 523 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACCGCCAAATACGTCACCAAGATCCTCCT 582 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 540 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACGGCAAAATACGTCACCAAGATCCTACT 599 Query 583 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGC-CAGAG 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 600 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGCAC-GAG 658 Query 642 CGGTGGTGGAAACAGCGGCGGGGCTAGAGATCTCAGCGGTGGAACGAGCCTTAGCTGCG- 700 ||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| Sbjct 659 CGGTGGTGGAAACAGCGGCAGGACTAGAGATCTCAGCGGTGGAGCGAGCCTTAGCTGCTC 718 Query 701 TTAGAGCTCATGTGCACGACAGCGGGAGGAGCTGCGGAGGTTCGTGCTCACGCGATGACG 760 || ||||| ||||| || || || | |||||| ||||||||||| ||||||||||||||| Sbjct 719 TT-GAGCTAATGTGTACAACGGCAGAAGGAGCGGCGGAGGTTCGCGCTCACGCGATGACG 777 Query 761 GTGCCGGCAATGGTGGCGGTGATGGCGAGACTAGCAGGGAG-GGGAAGAGAATACGCTAT 819 |||||||| ||||| ||||||||||||||| | || || || |||| |||||||||| || Sbjct 778 GTGCCGGCGATGGTAGCGGTGATGGCGAGATTGGCTGGTAGAGGGA-GAGAATACGCCAT 836 Query 820 AAGCATACTTTCCATAGTCTACGGGAAAGGAGGCGGAGGAGGAGATTCCGGCGAGGAGAT 879 |||||| |||||| | |||||||||||||| |||| |||||| |||||||||||||| || Sbjct 837 AAGCATCCTTTCCGTGGTCTACGGGAAAGGCGGCGAAGGAGGGGATTCCGGCGAGGAAAT 896 Query 880 CGCGGTGGCGCCGGCGGAAGAGGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 939 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 897 CGCGGTGGCGCCGGCGGAAGAAGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 956 Query 940 TACGGCGAGAGGAAGAAGAAAAGGGGCCCAACTATTGAAGACACTGGAGGAATATGGACG 999 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 957 TACGGCGAGAGGAAAAAGAAAAGGGGCCCAACTATTGAAGACACTAGAGGAATATGGACG 1016 Query 1000 GTTGGATCTGAGTCAGAATGGGACATGAGAAAATGAAATCTAACGGTGG-AGATTATGTC 1058 |||||||||||||||||||||||| ||||||| |||||||||||||| | | |||||||| Sbjct 1017 GTTGGATCTGAGTCAGAATGGGACCTGAGAAA-TGAAATCTAACGGTTGCA-ATTATGTC 1074 Query 1059 AGATGAAAAATAATAAATCTGAAAGCTAGtttt-ttt-GGGGTCACGGGCTTGTTGTTCT 1116 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 1075 AGATGAAAAATAATAAATCTGAAAGCTAGTTTTATTTTGGGGTCACGGGCTTGTTGTTCT 1134 Query 1117 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCtattaattatgtatatat 1176 ||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1135 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCT-TT------GTATATAT 1187 Query 1177 tacattaattgtcccttttaattatttatgtcaaaatttattaGGTTTT 1225 ||||||| | ||||||||||||||| ||||||||| |||||||||||| Sbjct 1188 TACATTA-TAATCCCTTTTAATTATTAATGTCAAAAATTATTAGGTTTT 1235 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60190453455 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5