BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487992

Length=1225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11550.1 | Symbols:  | ARM repeat superfamily protein | chr5...  1690    0.0  


> AT5G11550.1 | Symbols:  | ARM repeat superfamily protein | chr5:3708009-3709246 
REVERSE LENGTH=1238
Length=1238

 Score = 1690 bits (915),  Expect = 0.0
 Identities = 1144/1249 (92%), Gaps = 38/1249 (3%)
 Strand=Plus/Plus

Query  1     GGTGCGAACCAATAATTTTCCTCCTATTTTAAAA-AGAGACGCTTCCCTTCACTTCACTC  59
             ||| |||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct  1     GGTTCGAATCAATTATTTTCTTCCTA-TTTAAAACAGAGACGCTTCCCTTCACTTCACTC  59

Query  60    CACTTCACTT---A-----A-A-AG--T-CC-AGTGAGCGATGATGAAAGCAAACCAGAA  105
             ||||||||||   |     | | ||  | || ||||||||||||||||||||||||||||
Sbjct  60    CACTTCACTTGAAAGTCCCACACAGTCTCCCTAGTGAGCGATGATGAAAGCAAACCAGAA  119

Query  106   ACCGAAACCACACGCGCCGCCACGTCCTCTCTTCTCATGTGGCTTCTTCCGCCGCTGCAC  165
             ||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct  120   ACCGAAACCCCACGCGCCACCGCGTCCTCTCTTCTCCTGTGGCTTCTTCCGCCGCTGCAC  179

Query  166   ACAGTCCGTACTCAGTCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAACCCACCAC  225
             ||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct  180   ACAATCCGTCCTCAGCCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAAGCCACCAC  239

Query  226   CACATCATCCTCCTCTTCTTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG  285
             ||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  240   CACTTCCTCCTCATCTTCCTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG  299

Query  286   CTTCCCTCATCACCTTGATCAAActccatccaccgctcctccacct-c-c-tccaccacc  342
             ||| |||||||| ||||||||||||||||||||||||||||| ||| | | |||||| ||
Sbjct  300   CTTTCCTCATCATCTTGATCAAACTCCATCCACCGCTCCTCCTCCTCCTCATCCACCTCC  359

Query  343   tccacctccgcctcttccggtaaccaccactctccaAGAAACCTTCCAGATCGCAGAGCT  402
             |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  360   TCCACCACCGCCTCTTCCGGTCACCACCACTCTCCAAGAAACCTTCCAGATCGCAGAGCT  419

Query  403   TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTTCAGCTACTCGAGCGTGT  462
             |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct  420   TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTACAGCTACTCGAGCGGGT  479

Query  463   CGTCGTACCCGACCCGCCTTCTGATCCGACTTGTCCACCGGGTCTCATGCGATGCCTCGT  522
              |||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct  480   AGTCGTACCTGACCCGCCATCTGATCCGACTTGTCCACCGGGTCTCATGCGAGGTCTCGT  539

Query  523   CTCTTGCCTTCGTAGCAACAACAAGATCGTAACCGCCAAATACGTCACCAAGATCCTCCT  582
             ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct  540   CTCTTGCCTTCGTAGCAACAACAAGATCGTAACGGCAAAATACGTCACCAAGATCCTACT  599

Query  583   CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGC-CAGAG  641
             |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct  600   CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGCAC-GAG  658

Query  642   CGGTGGTGGAAACAGCGGCGGGGCTAGAGATCTCAGCGGTGGAACGAGCCTTAGCTGCG-  700
             ||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||  
Sbjct  659   CGGTGGTGGAAACAGCGGCAGGACTAGAGATCTCAGCGGTGGAGCGAGCCTTAGCTGCTC  718

Query  701   TTAGAGCTCATGTGCACGACAGCGGGAGGAGCTGCGGAGGTTCGTGCTCACGCGATGACG  760
             || ||||| ||||| || || || | |||||| ||||||||||| |||||||||||||||
Sbjct  719   TT-GAGCTAATGTGTACAACGGCAGAAGGAGCGGCGGAGGTTCGCGCTCACGCGATGACG  777

Query  761   GTGCCGGCAATGGTGGCGGTGATGGCGAGACTAGCAGGGAG-GGGAAGAGAATACGCTAT  819
             |||||||| ||||| ||||||||||||||| | || || || |||| |||||||||| ||
Sbjct  778   GTGCCGGCGATGGTAGCGGTGATGGCGAGATTGGCTGGTAGAGGGA-GAGAATACGCCAT  836

Query  820   AAGCATACTTTCCATAGTCTACGGGAAAGGAGGCGGAGGAGGAGATTCCGGCGAGGAGAT  879
             |||||| |||||| | |||||||||||||| |||| |||||| |||||||||||||| ||
Sbjct  837   AAGCATCCTTTCCGTGGTCTACGGGAAAGGCGGCGAAGGAGGGGATTCCGGCGAGGAAAT  896

Query  880   CGCGGTGGCGCCGGCGGAAGAGGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG  939
             ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  897   CGCGGTGGCGCCGGCGGAAGAAGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG  956

Query  940   TACGGCGAGAGGAAGAAGAAAAGGGGCCCAACTATTGAAGACACTGGAGGAATATGGACG  999
             |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  957   TACGGCGAGAGGAAAAAGAAAAGGGGCCCAACTATTGAAGACACTAGAGGAATATGGACG  1016

Query  1000  GTTGGATCTGAGTCAGAATGGGACATGAGAAAATGAAATCTAACGGTGG-AGATTATGTC  1058
             |||||||||||||||||||||||| ||||||| |||||||||||||| | | ||||||||
Sbjct  1017  GTTGGATCTGAGTCAGAATGGGACCTGAGAAA-TGAAATCTAACGGTTGCA-ATTATGTC  1074

Query  1059  AGATGAAAAATAATAAATCTGAAAGCTAGtttt-ttt-GGGGTCACGGGCTTGTTGTTCT  1116
             ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct  1075  AGATGAAAAATAATAAATCTGAAAGCTAGTTTTATTTTGGGGTCACGGGCTTGTTGTTCT  1134

Query  1117  TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCtattaattatgtatatat  1176
             ||||||||||||||||||||||||||||||||||||||||||| ||      ||||||||
Sbjct  1135  TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCT-TT------GTATATAT  1187

Query  1177  tacattaattgtcccttttaattatttatgtcaaaatttattaGGTTTT  1225
             ||||||| |  ||||||||||||||| ||||||||| ||||||||||||
Sbjct  1188  TACATTA-TAATCCCTTTTAATTATTAATGTCAAAAATTATTAGGTTTT  1235



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 60190453455


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5