BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487992
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11550.1 | Symbols: | ARM repeat superfamily protein | chr5... 1690 0.0
> AT5G11550.1 | Symbols: | ARM repeat superfamily protein | chr5:3708009-3709246
REVERSE LENGTH=1238
Length=1238
Score = 1690 bits (915), Expect = 0.0
Identities = 1144/1249 (92%), Gaps = 38/1249 (3%)
Strand=Plus/Plus
Query 1 GGTGCGAACCAATAATTTTCCTCCTATTTTAAAA-AGAGACGCTTCCCTTCACTTCACTC 59
||| |||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1 GGTTCGAATCAATTATTTTCTTCCTA-TTTAAAACAGAGACGCTTCCCTTCACTTCACTC 59
Query 60 CACTTCACTT---A-----A-A-AG--T-CC-AGTGAGCGATGATGAAAGCAAACCAGAA 105
|||||||||| | | | || | || ||||||||||||||||||||||||||||
Sbjct 60 CACTTCACTTGAAAGTCCCACACAGTCTCCCTAGTGAGCGATGATGAAAGCAAACCAGAA 119
Query 106 ACCGAAACCACACGCGCCGCCACGTCCTCTCTTCTCATGTGGCTTCTTCCGCCGCTGCAC 165
||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 120 ACCGAAACCCCACGCGCCACCGCGTCCTCTCTTCTCCTGTGGCTTCTTCCGCCGCTGCAC 179
Query 166 ACAGTCCGTACTCAGTCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAACCCACCAC 225
||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 ACAATCCGTCCTCAGCCCAACCTCTCCTCACCAGCAGCAACCTCGCCGTAAAGCCACCAC 239
Query 226 CACATCATCCTCCTCTTCTTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 285
||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CACTTCCTCCTCATCTTCCTCCTCCTCAACCTCAACTTCCCAAAGCTTCACTCAATGGCG 299
Query 286 CTTCCCTCATCACCTTGATCAAActccatccaccgctcctccacct-c-c-tccaccacc 342
||| |||||||| ||||||||||||||||||||||||||||| ||| | | |||||| ||
Sbjct 300 CTTTCCTCATCATCTTGATCAAACTCCATCCACCGCTCCTCCTCCTCCTCATCCACCTCC 359
Query 343 tccacctccgcctcttccggtaaccaccactctccaAGAAACCTTCCAGATCGCAGAGCT 402
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 360 TCCACCACCGCCTCTTCCGGTCACCACCACTCTCCAAGAAACCTTCCAGATCGCAGAGCT 419
Query 403 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTTCAGCTACTCGAGCGTGT 462
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 420 TCACCTCACATCCGTCTCTGAATCCGACAAGCTCCTCGCTCTACAGCTACTCGAGCGGGT 479
Query 463 CGTCGTACCCGACCCGCCTTCTGATCCGACTTGTCCACCGGGTCTCATGCGATGCCTCGT 522
|||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 480 AGTCGTACCTGACCCGCCATCTGATCCGACTTGTCCACCGGGTCTCATGCGAGGTCTCGT 539
Query 523 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACCGCCAAATACGTCACCAAGATCCTCCT 582
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 540 CTCTTGCCTTCGTAGCAACAACAAGATCGTAACGGCAAAATACGTCACCAAGATCCTACT 599
Query 583 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGC-CAGAG 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 600 CGCTCTCTGCCTCGCCGAAGGAAACCGCCACGTGGCGGTCGAGGCTGGAGCCGCAC-GAG 658
Query 642 CGGTGGTGGAAACAGCGGCGGGGCTAGAGATCTCAGCGGTGGAACGAGCCTTAGCTGCG- 700
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 659 CGGTGGTGGAAACAGCGGCAGGACTAGAGATCTCAGCGGTGGAGCGAGCCTTAGCTGCTC 718
Query 701 TTAGAGCTCATGTGCACGACAGCGGGAGGAGCTGCGGAGGTTCGTGCTCACGCGATGACG 760
|| ||||| ||||| || || || | |||||| ||||||||||| |||||||||||||||
Sbjct 719 TT-GAGCTAATGTGTACAACGGCAGAAGGAGCGGCGGAGGTTCGCGCTCACGCGATGACG 777
Query 761 GTGCCGGCAATGGTGGCGGTGATGGCGAGACTAGCAGGGAG-GGGAAGAGAATACGCTAT 819
|||||||| ||||| ||||||||||||||| | || || || |||| |||||||||| ||
Sbjct 778 GTGCCGGCGATGGTAGCGGTGATGGCGAGATTGGCTGGTAGAGGGA-GAGAATACGCCAT 836
Query 820 AAGCATACTTTCCATAGTCTACGGGAAAGGAGGCGGAGGAGGAGATTCCGGCGAGGAGAT 879
|||||| |||||| | |||||||||||||| |||| |||||| |||||||||||||| ||
Sbjct 837 AAGCATCCTTTCCGTGGTCTACGGGAAAGGCGGCGAAGGAGGGGATTCCGGCGAGGAAAT 896
Query 880 CGCGGTGGCGCCGGCGGAAGAGGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 939
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGCGGTGGCGCCGGCGGAAGAAGTGGCTCGGGCGGTGGCGTTGGCGCTGGAAGGAGAGTG 956
Query 940 TACGGCGAGAGGAAGAAGAAAAGGGGCCCAACTATTGAAGACACTGGAGGAATATGGACG 999
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 957 TACGGCGAGAGGAAAAAGAAAAGGGGCCCAACTATTGAAGACACTAGAGGAATATGGACG 1016
Query 1000 GTTGGATCTGAGTCAGAATGGGACATGAGAAAATGAAATCTAACGGTGG-AGATTATGTC 1058
|||||||||||||||||||||||| ||||||| |||||||||||||| | | ||||||||
Sbjct 1017 GTTGGATCTGAGTCAGAATGGGACCTGAGAAA-TGAAATCTAACGGTTGCA-ATTATGTC 1074
Query 1059 AGATGAAAAATAATAAATCTGAAAGCTAGtttt-ttt-GGGGTCACGGGCTTGTTGTTCT 1116
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1075 AGATGAAAAATAATAAATCTGAAAGCTAGTTTTATTTTGGGGTCACGGGCTTGTTGTTCT 1134
Query 1117 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCtattaattatgtatatat 1176
||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1135 TTTGTTAAAGATGTGTGGGCCTTCGTCTCTGTCTCCCCTATCT-TT------GTATATAT 1187
Query 1177 tacattaattgtcccttttaattatttatgtcaaaatttattaGGTTTT 1225
||||||| | ||||||||||||||| ||||||||| ||||||||||||
Sbjct 1188 TACATTA-TAATCCCTTTTAATTATTAATGTCAAAAATTATTAGGTTTT 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60190453455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5