BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487995
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11580.1 | Symbols: | Regulator of chromosome condensation ... 2660 0.0
> AT5G11580.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr5:3718810-3721334 FORWARD LENGTH=1974
Length=1974
Score = 2660 bits (1440), Expect = 0.0
Identities = 1629/1720 (95%), Gaps = 13/1720 (1%)
Strand=Plus/Plus
Query 1 ATTTTAGAAAGCAATTGAGCACGAACCTTATCCGTTACAGCGGCAATGGAGGACAAATCG 60
|||||||||||||| |||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 59 ATTTTAGAAAGCAACTGAGGACGAACCTTATCCGTCACAGTGGCAATGGAGGACAAATCA 118
Query 61 TTGACGTTACCGATTTCTGAGGATTTATCCCGGAAAATAATCTCTCTTGCCGCCGGTGAA 120
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCGACGTTACTGATTTCTGAAGATTTATCCCGGAAAATAATCTCTCTTGCCGCCGGTGAA 178
Query 121 GCTCATACAATCGCTCTGACCGGCGATGGATGTGTTTACTCATGGGGAAGAGGAATGTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCTCATACAATCGCTCTGACCGGCGATGGATGTGTTTACTCATGGGGAAGAGGAATGTTT 238
Query 181 GGCCGTCTTGGTACTGGTAAGGAATCGGACGAGCTTGTTCCAGTTCGAGTCGAGTTGGAG 240
|||||||| ||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 239 GGCCGTCTCGGTACGGGTAAGGAGTCGGACGAGCTTGTTCCAGTTCTAGTCGAGTTC--- 295
Query 241 TTTCCAAATCAAGCGGAAGGAGATCGGGCTCGAATCGTTGGTATTGCTGCTGGTGCTTAT 300
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 296 ---CCAAATCAAGCGGAAGGAGATCGGATTCGAATCGTTGGTGTTGCTGCTGGTGCTTAT 352
Query 301 CACAGTCTCGCTGTCTCAGATGATGGCTCGGTTTGGTGTTGGGGTTATAACATTTATGGC 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 353 CACAGTCTCGCTGTCTCAGATGATGGCTCGGTTTGGTGTTGGGGTTACAACATTTATGGC 412
Query 361 CAACTTGGTTTTGATGGGGAAAACTCTTTGGCACCATGCTTGATAAAAAATTTGTTTGAA 420
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 413 CAACTTGGTTTTGATGGGGAAAACTCCTTGGCACCATGCTTGATCAAAAATTTGTTTGAA 472
Query 421 CAAGGAGCATCTAGTTCTTCTCTAAATGATTCAGGTAGAGAAGCTAGATCAGATTTAAAG 480
| || | |||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 473 CGAGAAACATCTAGTTCTTCTCTAAATGATTCAGGTAGAGAAGTTGGATCAGATTTAAAG 532
Query 481 GTTTGTGCTGTTAAGGCCGGATCCATGATGTCGCTTGCCATTGATAATGTCGGAGGTCTT 540
|||||| |||| ||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 533 GTTTGTACTGTAAAGGCTGGCTCCATGATGTCTCTTGCCATTGATAATGTCGGAGGTCTT 592
Query 541 TGGATGTGGGGCAATGTTCCTCCACAAAACAGTGAACCTGAACCTCGTTTGTCTTTTACA 600
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 593 TGGATGTGGGGCAATGTTCCTCCACAAGACAGTGAACCTGACCCTCGTTTGTCTTTTACT 652
Query 601 AGCATCCCGATTCCATTTCCTATACTCGACTTCCATGGACGGACGGTTTTGAAGGTAGCA 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 653 AGCATCCCGATTCCATTTCCTATACTCGACTTCCATGGCCGGACGGTTTTGAAGGTAGCA 712
Query 661 TGTGGGGATGAACACGTTGTTGCCCTCGTTGCACCAGGGGATATCCACAAAGACAACAGT 720
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 713 TGTGGGGATGAACACGTTGTTGCCCTCGTTGGTCCTGGGGATATCCACAAAGACAACAGT 772
Query 721 TATGATGTATCAGTGCTGTATTCTTGGGGAAATAATCATCATGGCCAGTTAGGGCTTGGG 780
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 773 TATGATGTATCCGTGCTGTATTCTTGGGGAAATAATCATCATGGCCAGTTAGGACTTGGA 832
Query 781 GATA-AGGAGAGCCGTGCGAGGCCTCAGATTGTGGAGACATTTAACCAGAACTCGGGTCT 839
||| || |||||||||| |||||||||| ||||||||||||||||||||| ||||||||
Sbjct 833 GATGGAG-AGAGCCGTGCAAGGCCTCAGACTGTGGAGACATTTAACCAGAAGTCGGGTCT 891
Query 840 TACAGTCTACGACATAGCTTGTGGTGCTCATCACACAGCTCTTCTCACCTACAAGAAGGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 892 TACAGTCTACGACATAGCTTGTGGTGCTCATCACACAGCTCTTCTCACCTACAGGAAGGA 951
Query 900 GACACAGAAAGGACCAAGCATTTGCTGGACGTTCGGCTTTGGAGAAAATGGTCAGCTTGG 959
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GACACCTAAAGGACCAAGCATTTGCTGGACGTTCGGCTTTGGAGAAAATGGTCAGCTTGG 1011
Query 960 GCATAGAAGTAACAAAAGCTCATCGATTCCAGAGCCAGTTTCAGAGCTCCCAGAACACGC 1019
||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1012 GCATAGAAGTAACAAGAGCTCATCGCTTCCAGAGCCAGTTTCAGATCTCCCAGAACACGC 1071
Query 1020 TTACTTAGTTTCTGTAGACTGTGGACTATTCCACACAAGCGTGGTGTCCTCTGAGGGATA 1079
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1072 TTACTTAGTTTCTGTAGACTGTGGATTATTCCACACAAGCGTGGTGTCCTCTGAGGGATA 1131
Query 1080 CGTGTGGTCGTGGGGAATGGAGAGAGGATTAGGATTATGCCCCGATGTCAACTTCACAGA 1139
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CGTGTGGTCGTGGGGAATGGAAAGAGGATTAGGATTATGCCCCGATGTCAACTTCACAGA 1191
Query 1140 GGTGGAAGCAGGAGATGATAGTGTACCAAGAAAGATTTCAGCTGGGTC---AAGATTTCG 1196
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1192 GGTGGAAGCAGGAGATGATAGTGTACCAAGAAAGATTTCAGGTGGGTCGTCAAGATTTCG 1251
Query 1197 TGACCCGGTTCAGGTTTCTTGCGGGGCAGCACATACAGTTCTTGTGGCAGATGGTGGGTA 1256
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 1252 TGACCCGGTTCAGGTTTCTTGCGGGGCTGCACATACAGTTCTTGTGGTAGATGGTGGTTA 1311
Query 1257 CAAGCTGTGGTCTTGGGGAAGAGGAAGAAATGGAGTGCTCGGGACTGGGAATGTTAGCGA 1316
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1312 CAAGCTGTGGTCTTGGGGAAGAGGAAGAAATGGAGTGCTCGGAACTGGGAATGTTAGCGA 1371
Query 1317 CTGTTATGTCCCTACTCACGTCTTCTGGCCAAATGAGCTGAAACCAGAGAAAGAAGAAGT 1376
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1372 CTGTTATGTCCCTACTCTCGTCTTCTGGCCGAATGAGCTGAAACCTGAGAAAGAAGAAGT 1431
Query 1377 AGCTGATGCTG-ACAAAAGCGCATCAACTGAGGAGATTAAACGGCTAGAATCAAAACTAA 1435
| | |||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 ACCCGATGATGGA-AAAAGCGCATCAACTGAGGAGATTAAACGGCTAGAATCAAAACTAA 1490
Query 1436 TGGTGATGGAAAGATATGCAAGCATACTTCATGGATCCATATTTGGGAAACCTTTCAATG 1495
||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 1491 TGGTGATGGAAAGATATGCAAGCATACTTCATGGATCCATATTCGGAAAACCTTTTAATG 1550
Query 1496 AAGAGGAAGATATCCCGTATTCATTACGGGTTTCTGGGTATTTCGATATGGGCAAAGAGT 1555
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1551 AAGAGGAAGATATCCCATATTCATTACGGGTTTCTGGGTATTTCGATATGGGAAAAGAGT 1610
Query 1556 GGGGAGAGATGCTGGAGAGTGCAGATAAGAGTCAGCTTATGAGGCTTCAAGCTTTCTATG 1615
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1611 GGGGAGAGATGCTGGAGAGTGCTGATAAGAGTCAGCTGATGAGGCTTCAAGCTTTCTATG 1670
Query 1616 AAGACATGATTGTTAGAGTAAAGGACAAGGTGCTGCAGAGAAGGATTCAGGAGATTATGA 1675
|||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1671 AAGACATGATTGGTAGAGTTAAGGACAAGGTGTTGCAGAGAAGGATTCAGGAGATTATGA 1730
Query 1676 AAGATTGTTTTCAATCTTCAGCACCTAAACACTAATATCA 1715
|||||||| |||| |||||||| |||||| |||| |||||
Sbjct 1731 AAGATTGTCTTCAGTCTTCAGCCCCTAAATACTAGTATCA 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88503560835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5