BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487996
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding super... 1254 0.0
AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfa... 241 1e-62
AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamil... 145 1e-33
> AT5G11590.1 | Symbols: TINY2 | Integrase-type DNA-binding superfamily
protein | chr5:3727534-3728726 REVERSE LENGTH=1193
Length=1193
Score = 1254 bits (679), Expect = 0.0
Identities = 800/857 (93%), Gaps = 13/857 (2%)
Strand=Plus/Plus
Query 73 CTTTTTATTTGCATAAATCTTGGGATCCGAATCGTAAAAAGCAATCAGAATAATAGACTT 132
|||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 140 CTTTTTATTTGCATTAATCTCGGGATCCGAATCGAAAAAAGCAATCAGAATAATAGACTT 199
Query 133 GTACGATTCTTGTGCCTAAGCTAA-ACAATGGCAGAGGAATACTACAACCTCCGCTCGGA 191
||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 200 GTACGATACTTGTGCCTAAGCTAACACAATGGCAGAGGAATACTACAGCCTCCGCTCGGA 259
Query 192 GAGAGTAACTCAGCATCTTGTCCATAACTCGGAGTCAGACTCAGTGAGTCAGAAAAGCAA 251
|||||||||||||| |||||||| |||||||||||| |||||||||||| | ||||||||
Sbjct 260 GAGAGTAACTCAGCTTCTTGTCCCTAACTCGGAGTCTGACTCAGTGAGTGACAAAAGCAA 319
Query 252 AGCAGAGCAAAGCGAGAATAAGAAGACGAAACGTGTGAGAGACTCCGGTAAACACCCAGT 311
||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||
Sbjct 320 AGCTGAGCAAAGCGAG---AAGAAGACTAAACGTGGGAGAGACTCCGGTAAACACCCTGT 376
Query 312 TTACCGTGGAGTAAGAATGAGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAG 371
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TTATCGCGGAGTAAGGATGAGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAG 436
Query 372 GAAGAAATCACGTATTTGGCTCGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACA 431
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 437 GAAGAAATCACGTATTTGGCTGGGAACTTTCCCGACGCCGGAGATGGCGGCGCGTGCACA 496
Query 432 CGACGTGGCGGCTCTGAGCATAAAAGGAACCTCCGCTATACTAAACTTCCCTGAACTTGC 491
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||
Sbjct 497 CGACGTGGCGGCTCTGAGCATTAAAGGAACGGCCGCTATACTAAACTTCCCTGAACTCGC 556
Query 492 TGACTCATTTCCTCGACCCGTCTCGCTAAGCCCTAGAGACATTCAGACCGCAGCTCTTAA 551
||||||||| ||||||||||| || |||||||| ||||||||||||| |||||||||||
Sbjct 557 TGACTCATTCCCTCGACCCGTTTCATTAAGCCCTCGAGACATTCAGACAGCAGCTCTTAA 616
Query 552 AGCAGCTCACATGGAACCGACGACGTCGTTTTCATCTTCCACAtcgtcgtcgtcgtc--- 608
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 617 AGCAGCTCACATGGAACCGACGACGTCGTTTTCATCTTCCACGTCTTCGTCGTCGTCTTT 676
Query 609 gtcTTCTACGTCTTCGCTTGAGTCTCTTGTGTTGGTGATGGACCTCTCGAGGACTGAGTC 668
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 677 GTCTTCTACGTCTTCGCTCGAGTCTCTTGTGTTGGTGATGGACCTCTCGAGGACTGAGTC 736
Query 669 GGAGGAGCTCGGTGAGATTGTGGAGCTGCCAAGTCTCGGAGCGAGTTACGACGTCGACTC 728
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 737 GGAGGAGCTCGGTGAGATTGTGGAGCTTCCAAGTCTCGGGGCGAGTTACGACGTCGACTC 796
Query 729 GGCTAACCTTGGGAACGAGTTTGTGTTCTATGACTCAGTGGACTACTGTTTATATCCGCC 788
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 797 GGCTAACCTTGGGAACGAGTTTGTCTTCTATGACTCAGTTGACTACTGTTTATATCCGCC 856
Query 789 GCCGTGGGGACAGTCGTCGGAAGATAACTACGGTTACGGAATTAGCCCTTATTTTGGCCA 848
|||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||
Sbjct 857 GCCGTGGGGACAGTCGTCCGAAGATAACTATGGTCACGGAATTAGCCCTAATTTTGGCCA 916
Query 849 TGGCTTGTCGTGGGATCTTTAACAGTTTATTTTGTATCATTACTATAATAATGTTTTGTT 908
||||||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct 917 TGGCTTGTCATGGGATCTCTAACAGTTTATTTTGTATCATTACCATAAT---GTTTTGTT 973
Query 909 -AAT-CACGtttttttt 923
|| || |||| ||||
Sbjct 974 TAAAACA-GTTTATTTT 989
Score = 130 bits (70), Expect = 3e-29
Identities = 103/117 (88%), Gaps = 9/117 (8%)
Strand=Plus/Plus
Query 915 Gtttttttttt---tttttaagt-ttagctaag-aa----ttttttttttttttttttGC 965
||||||||||| ||||| || ||||||||| || |||||||||||||||||||
Sbjct 1046 GTTTTTTTTTTGAGTTTTTTGGTGTTAGCTAAGAAAGGTTTTTTTTTTTTTTTTTTTTGG 1105
Query 966 TGCGTGTGTGAGCTCCATAATGATACGTGTACAAAACTCTATTTGTGtttttttttt 1022
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 AGCGGGTGTGAGCTCCATAATGATACGTGTACAAAACTCTATTTGTGTTTTTTTTTT 1162
> AT5G25810.1 | Symbols: tny | Integrase-type DNA-binding superfamily
protein | chr5:8986771-8987787 REVERSE LENGTH=1017
Length=1017
Score = 241 bits (130), Expect = 1e-62
Identities = 263/326 (81%), Gaps = 14/326 (4%)
Strand=Plus/Plus
Query 272 AGAAGACGAAA-CGTGTGAGAGACTCCGGTAAACACCCAGTTTACCGTGGAGTAAGAATG 330
|||||| |||| || || | ||| |||||||| || || ||||| || || || ||| |
Sbjct 220 AGAAGAAGAAACCG-GTTAAAGATTCCGGTAAGCATCCGGTTTATCGGGGTGTCCGAAAG 278
Query 331 AGGAACTGGGGAAAATGGGTGTCGGAGATTCGTGAGCCGAGGAAGAAATCACGTATTTGG 390
||||||||||||||||||||||| ||||| ||||| || ||||| ||||| || || |||
Sbjct 279 AGGAACTGGGGAAAATGGGTGTCCGAGATACGTGAACCTAGGAAAAAATCCCGAATATGG 338
Query 391 CTCGGAAC-TTTCCCGACGCCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTCTGAG 449
|| ||||| ||||| | ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 339 CTAGGAACGTTTCCTTCC-CCGGAGATGGCGGCGCGTGCACACGACGTAGCCGCTCTTAG 397
Query 450 CATAAAAGGAACCTCCGCTATACTAAACTTCCCTGAACTTGCTGACTCATTTCCT-CGAC 508
||| |||||| ||||||||||||| || |||||||| || || | ||| ||||| || |
Sbjct 398 CATCAAAGGAGCCTCCGCTATACTCAATTTCCCTGACCTAGCCGGCTC-TTTCCCACG-C 455
Query 509 CC--GTCTCGCTAAGCCCTAGAGACATTCAGACCGCAGCTCTTAAAGCAGCTCACATGGA 566
|| | |||||| |||||| ||||||| ||| ||| ||||| ||||| || ||||||||
Sbjct 456 CCTAG-CTCGCTTAGCCCTCGAGACATCCAGGTCGCGGCTCTCAAAGCCGCACACATGGA 514
Query 567 -ACCG-ACGACGTCGTTTTCATCTTC 590
||| || | ||| ||||| |||||
Sbjct 515 GACCTCAC-A-GTCTTTTTCTTCTTC 538
> AT4G16750.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:9420917-9421759 REVERSE LENGTH=843
Length=843
Score = 145 bits (78), Expect = 1e-33
Identities = 135/162 (83%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 300 TAAAC-ACCCAGTTTACCGTGGAGTAAGAATGAGGA-ACTGGGGAAAATGGGTGTCGGAG 357
||||| ||| | ||| ||||| || ||||||| || | ||||||||||||||||| ||
Sbjct 204 TAAACAACCAAATTT-TCGTGGGGTCAGAATGA-GACAATGGGGAAAATGGGTGTCTGAA 261
Query 358 ATTCGTGAGCCGAGGAAGAAATCACGTATTTGGCTCGGAACTTTCCCGACGCCGGAGATG 417
||| | || || || ||||||||| | || |||||||| |||||| | ||||||||||||
Sbjct 262 ATTAGAGAACCAAGAAAGAAATCAAGAATATGGCTCGGTACTTTCTCTACGCCGGAGATG 321
Query 418 GCGGCGCGTGCACACGACGTGGCGGCTCTGAGC-ATAAAAGG 458
||||||||||||||||||||||||||| | ||| || |||||
Sbjct 322 GCGGCGCGTGCACACGACGTGGCGGCTTT-AGCCATCAAAGG 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5