BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487997

Length=788
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   739    0.0  


> AT5G11600.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; 
EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G19990.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:3733654-3735099 REVERSE LENGTH=974
Length=974

 Score =  739 bits (400),  Expect = 0.0
 Identities = 439/458 (96%), Gaps = 1/458 (0%)
 Strand=Plus/Plus

Query  331  GAAAGCGAAAACAACATCTGCAGCAGTGAGCTTGGCGAAAGGGAAAGCGAAAAGAGAGAA  390
            |||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||
Sbjct  381  GAAAGCGAAAACAACATCTGCAACAGTAAGCTTGGTGAAAGGGAAAGCGAAAAGAGAGAA  440

Query  391  GAAGGTTTATTCATTACCTGGACAAAAGTTTGATCCTCCTGAAGAGAGAGAGCCCTTGAG  450
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  441  GAAGGTTTATTCATTAGCTGGACAAAAGTTTGATCCTCCTGAAGAGAGAGAGCCCTTGAG  500

Query  451  GATATTCTATGAATCATTATCCAAACAAATACCTGGGAGTGAAATGGCTGAGTTCTGGCT  510
            ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct  501  GATATTCTATGAATCCTTGTCGAAACAAATACCTGGGAGTGAAATGGCTGAGTTCTGGCT  560

Query  511  AATGGAACATGGTATGTTGTCTCCCGAAAAGGCGAAGCGAGCCTTTGAGAAAAAACAGAG  570
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  561  TATGGAACATGGTATGTTGTCTCCCGAAAAGGCGAAGCGAGCCTTTGAGAAAAAGCAGAG  620

Query  571  AAAGATGAAGCAAATTCGAATGGGGACACCGATTAAACCGGCACCAACGTTTTCAAGTAA  630
            ||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |||||
Sbjct  621  AAAAATGAAGCAAATTCGAATGGGGACACCGAGTAAATCGGCACCAACGTTTTCTAGTAA  680

Query  631  AGCGGAGAGTTCTCAAAGAACATCTGCGTCCAAGAACAACGGTTTAGATGCGAGAAAGAA  690
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  681  AGCGGAGAGTTCTCAAAGAACATCTGCATCCAAGAACAACGGTTTAGATGCGAGAAAGAA  740

Query  691  GAAGAAAGTCGTTGATGATGACGACGACGATGATGATGATTTCATCCTAAGCCACAAGAG  750
            |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  741  GAAGAAAGTCGTCGATGATGATGACGATGATGATGATGATTTCATCCTAAGCCACAAGAG  800

Query  751  AAGGAAAGTGTAAACCATACAAAGTTGTTATTAGAGAA  788
            ||||||||||||||||||||||| |||||||||| |||
Sbjct  801  AAGGAAAGTGTAAACCATACAAACTTGTTATTAG-GAA  837


 Score =  532 bits (288),  Expect = 1e-150
 Identities = 348/377 (92%), Gaps = 3/377 (1%)
 Strand=Plus/Plus

Query  1    GAATCATTGTCGGATTCTTCGAGCAGAGAAAAATTAGTTGAGCTGAATTTCAGGTTAATC  60
            |||||||||||||||| ||| |||  ||||||| ||||||||||||| ||||||||||||
Sbjct  16   GAATCATTGTCGGATTTTTCAAGC--AGAAAAAGTAGTTGAGCTGAACTTCAGGTTAATC  73

Query  61   TGAGC-TTTTGATGGCGACACAGGCGAGATCAAGTTCAGCTAAGAGCGAGCCACGCGATG  119
            ||||| |||| ||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct  74   TGAGCTTTTTCATGGCGACACAGGAGAGACCTAGTTCAGCTAAGAGCGAGCCACGCGATG  133

Query  120  GGTCTTCTTCTCTTTCTTCCAGAGTCAAGATCGATCCGTCCATTATGGACAAAAAGAAGA  179
             ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct  134  CGTCTTCTTCTCTTTCTTCCAGAGTCAAGATCGATCCGTCTATTAAGGACAAAAAGAAGA  193

Query  180  TCGTGACCTCTAACAGACCGATCATGTCGGATTCCAAACCCAGATCCTCTGTTTCCACCG  239
            ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  194  TCGCGACCTCTAGCAGACCGATCATGTCGGATTCTAAACCCAGATCCTCTGTTTCTACCG  253

Query  240  TCACGGCGAAAGCCGAGGCAAAGCCCAAAGTACCTGTAAATTCAGTGAAATCCACAGCAG  299
            ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||| 
Sbjct  254  TCACGGCGAAATCCGAGGCAAAGCCCAAAGTACCTATAAATTCAGTGAAAACCATAGCAA  313

Query  300  CAACATCTGCAGCAGCGAGCTTGGCGAAAGGGAAAGCGAAAACAACATCTGCAGCAGTGA  359
            |||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||
Sbjct  314  CAACATCTGCAGCAGCGAGCTTGGTGAAAGGGAAAGCGCAAACAACATCTACAGTAGTGA  373

Query  360  GCTTGGCGAAAGGGAAA  376
            |||||| ||||| ||||
Sbjct  374  GCTTGGTGAAAGCGAAA  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 38328654161


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5