BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487999
Length=1933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11610.1 | Symbols: | Exostosin family protein | chr5:37354... 2601 0.0
> AT5G11610.1 | Symbols: | Exostosin family protein | chr5:3735440-3738217
REVERSE LENGTH=1944
Length=1944
Score = 2601 bits (1408), Expect = 0.0
Identities = 1784/1960 (91%), Gaps = 47/1960 (2%)
Strand=Plus/Plus
Query 1 GAACCAAATTTAAAGCCATCGATTGCCTTGTCTTGTCTCTTTGCTTGTTAATTATTTGTC 60
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GAACAAAATTTAAAGCCATCGATTGCCTTGTCTTGTCTCTTTGCCTGTTAATTATTTGTC 60
Query 61 TGAATCCTCCTCTCCTGATGATCAATCCAAGAAACTTCGAAA-AAACGCTCAGATTCGAC 119
|||||| ||||||||||||||||| |||||| |||||| ||| |||||||||||||||||
Sbjct 61 TGAATCTTCCTCTCCTGATGATCACTCCAAGTAACTTC-AAAGAAACGCTCAGATTCGAC 119
Query 120 AGTTCCATATATCAACAAACAT--T-TCAAGCTCTTATCTGATGTATCTGTGTTGTGATG 176
||||| |||||||||||||||| | ||||||||||| |||| ||||| |||| |||||
Sbjct 120 AGTTCTATATATCAACAAACATCATCTCAAGCTCTTACCTGA--TATCTCTGTTTTGATG 177
Query 177 GATCGAAGTCGGGTTTTGCGGTTTCTAAGCCAAGTGGAAACATGTAGAGTTGTTCTTCTC 236
|||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 178 GATCAAAGTCGGGTTTTGCGGTTTATAGGCCAAGTGGAAACCTGTAGAGTTGTTCTTCTC 237
Query 237 ATGGTTCTGGTTGTTGCCTTCGTTTCAGGCCTTCAGTATTTCGAGCTCGCTCCAG---TA 293
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 238 ATGGTTCTGGTTGTTGCCTTCGTTTCAGGCCTTCAGTATTTTGAGCTCTCTCCAGTACTA 297
Query 294 CTATCTATTGTTTCACCTGGAAACGGCACTGTTTCTGAATACAGAGAATCCAATGATACC 353
|||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||
Sbjct 298 CTATCTATTGTTTCACCTGGAAACAGCACTATTTCTGAATTCAGAAAATCCAATGATACG 357
Query 354 ACCAAAAGTACTGAAAATGAAACGTTTCTTGCATCTCAAGAAGCATCCACCGAGCTTAAA 413
|| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 358 ACTAAAAGTGCTGAAAATGAAACGTTTCTTGCATCTCAAGAAGCATCCACCGGGCTTAAA 417
Query 414 CCATATAACAACATCACTTCGGAGGTTTTGAAGAGTTCTGAGCACAAGTTTCTGAATGAT 473
|| |||||| | | ||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 418 CCGTATAAC-AGA--ACTACAGAGGTATTGAAGAGTTCTGAGCACAAGTTTCTGAATGAT 474
Query 474 TCTCCCAAAATAGAAGTTTCTGGACAAAGTAGAAGAAGCAATGAAACCGCAAGTTCTCTG 533
|||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 475 TCTCACAAAATAGAAGCTTCTGGACAACGTAGAAGAAGCAATGAAACTGCAAGTTCTCTG 534
Query 534 CATTCTCTTCAACCCAGGATTCCTCAAATCCACAGGAAATATCCCCATAGGAGCACAAAA 593
||| |||||||||| | |||||||||||||| || |||||||||||||||||||| || |
Sbjct 535 CATCCTCTTCAACCAAAGATTCCTCAAATCCGCAAGAAATATCCCCATAGGAGCATAACA 594
Query 594 AAGCCACCAGT-AGTTGTCATATCAATAACA-CAGATGAACAAAATGATATTGAAGCGTC 651
||||||||| | | ||||||||||||||| | ||||||||||| |||||||||||||| |
Sbjct 595 AAGCCACCA-TCAATTGTCATATCAATAA-AGCAGATGAACAATATGATATTGAAGCGGC 652
Query 652 ATAACGATCCAAAAAATTCACTTGCACCTCGT-TGGGGATTAAAAGTGGACGAAGAGCTT 710
|||| ||||||||||||||||||||||||| | ||||||| |||||||||| ||||||||
Sbjct 653 ATAATGATCCAAAAAATTCACTTGCACCTC-TCTGGGGATCAAAAGTGGACCAAGAGCTT 711
Query 711 AGAACTGCAAGAGACAAGATCAAGAACGCGGGTTTGCTCAAGAAGGATGATAATCTTTAT 770
| |||||||||||||||||||||||| |||| |||| ||||||| ||||||| ||||||
Sbjct 712 AAAACTGCAAGAGACAAGATCAAGAAAGCGGCTTTGGTCAAGAAAGATGATACTCTTTAC 771
Query 771 GCGCCTCTCTACCACAATC-TATCCATCTTCAAAAGGAGCTATGAGCTAATGGAACAAAC 829
|| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GCACCTCTCTACCACAA-CATATCCATCTTCAAAAGGAGCTATGAGCTAATGGAACAAAC 830
Query 830 TCTGAAAGTGTATGTCTACTCGGAAGGGGACAGACCCATCTTCCATCAGCCGGAGGCAAT 889
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 831 TCTGAAAGTGTATGTCTACTCGGAAGGGGATAGACCAATTTTCCATCAGCCTGAGGCAAT 890
Query 890 AATGGAAGGGATTTACGCGTCAGAAGGATGGTTTATGAAACTAATGGAGAGTAACCATAG 949
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 891 AATGGAAGGGATTTACGCATCAGAAGGATGGTTTATGAAACTAATGGAGAGTAGCCATAG 950
Query 950 ATTCTTGACAAAAGATCCCAACATAGCTCATCTATTCTACTTGCCTTTCAGTACAAGAAT 1009
|||||||||||||||||||| || ||||||| |||||||| | ||||||||| |||||||
Sbjct 951 ATTCTTGACAAAAGATCCCACCAAAGCTCATTTATTCTACATACCTTTCAGTTCAAGAAT 1010
Query 1010 TCTTCAACAGAAACTTTACGTTCATGACTCTCACAGTCGTAGA-AATCTTGTTAAATATC 1068
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1011 TCTTCAACAGAAACTTTACGTTCATGACTCTCACAGTCGTA-ATAATCTTGTTAAATATC 1069
Query 1069 TTAAAAACTACCTCGATCTCATTGCTTCCAACTACCCTTTCTGGAATAGAACTCGTGGCT 1128
|| ||||||| | |||||||| |||||||||||||||| ||||||||||||| ||||||
Sbjct 1070 TTGGAAACTACATTGATCTCATCGCTTCCAACTACCCTTCCTGGAATAGAACTTGTGGCT 1129
Query 1129 CCGATCATTTCTTCACCGCTTGCCATGACTGGGCTCCAGCTGAGACTAGAGGACCGTACA 1188
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 1130 CCGATCATTTCTTCACCGCTTGCCATGACTGGGCTCCAACCGAGACTAGGGGACCGTACA 1189
Query 1189 TAAACTGTATTAGATCACTCTGTAACGCCGATGTCGG-AGTAGACTTTGTGGTCGGAAAA 1247
||||||| || ||| ||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1190 TAAACTGCATCAGAGCACTCTGTAACGCCGATGTTGGCA-TAGACTTTGTGGTCGGAAAA 1248
Query 1248 GATGTCTCTTTGCCGGAAACAAAAATCTCTTCGTCACAAAACCCAAACGGAAATATTGGA 1307
||||| |||||||||||||| ||| ||||||| | ||||| ||||||||||| ||||||
Sbjct 1249 GATGTTTCTTTGCCGGAAACTAAAGTCTCTTCTTTGCAAAATCCAAACGGAAAAATTGGA 1308
Query 1308 GGTAACCGCCCTTCCAAGCGAACCATCCTCGCTTTTTTCGCCGGGAGCCTACACGGTTAT 1367
|||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1309 GGTAGCCGCCCTTCCAAGCGAACCATCCTCGCTTTTTTCGCCGGGAGCTTGCACGGTTAC 1368
Query 1368 GTTAGACCCATCTTGCTTAACCAATGGTCTTCGAGACCTGAGCCAGATATGAAGATCTTT 1427
||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 1369 GTTAGACCCATCTTGCTTAACCAATGGTCATCGAGACCTGAACAAGATATGAAGATCTTT 1428
Query 1428 AACCGGATCGATCACAAATCGTACATCCGGTACATGAAACGCAGCAGATTCTGTGTTTGC 1487
|| || |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 1429 AATCGTATCGATCATAAATCATACATCCGTTACATGAAACGCAGCAGATTCTGCGTTTGC 1488
Query 1488 GCGAAAGGTTACGAGGTGAATAGCCCTAGAGTGGTGGAGTCGGTTTTGTACGGTTGCGTT 1547
|| |||||||||||||| ||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 1489 GCTAAAGGTTACGAGGTTAATAGCCCTAGAGTGGTTGAGTCGATTTTGTACGGTTGTGTT 1548
Query 1548 CCGGTGATTATCTCTGATAATTTTGTGCCACCGTTTCTTGAGATTCTGAATTGGGAATCT 1607
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CCGGTGATTATCTCTGATAACTTTGTGCCACCGTTTCTTGAGATTCTGAATTGGGAATCT 1608
Query 1608 TTCGCTGTGTTTGTGCCGGAGAAAGAGATTCCGAATCTGAGGAAGATTCTGATATCGATT 1667
||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1609 TTCGCAGTGTTTGTGCCGGAGAAAGAGATCCCGAATCTAAGGAAGATTCTGATATCGATT 1668
Query 1668 CCGGTGAGGAGATACGTGGAGATGCAAAAGAGGGTTATGAAGGTTCAAAAACATTTCATG 1727
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1669 CCGGTGAGGAGATACGTGGAGATGCAAAAGAGGGTTTTGAAGGTTCAAAAACATTTCATG 1728
Query 1728 TGGCATGATGGTGAACCGGTTCGGTATGATGTATTTCATATGATTCTTCACTCGGTTTGG 1787
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1729 TGGCATGATGGTGAACCGGTTCGGTATGATATATTTCATATGATTCTTCATTCGGTTTGG 1788
Query 1788 TATAACCGGGTTTTTCAAACGTTTTAGCCAGATTTGATATAATCTGGTTTGGCAAAAGTG 1847
|||||||| ||||||||||||||||||||||||| || || |||||| ||| ||
Sbjct 1789 TATAACCGAGTTTTTCAAACGTTTTAGCCAGATTA-AT-TA----GGTTTGACAAGGGT- 1841
Query 1848 TTCTGGTTTGTA-TT-GTTACAT-C-AAT--TTAA--ACATCAACTTAAGATTGTATATT 1899
|| ||||||| || | ||| | | ||| |||| || || | |||||||||| ||
Sbjct 1842 TT-TGGTTTGGCCTTTGCTACTTGCCAATAATTAACTACGTCTCCGGAAGATTGTATTTT 1900
Query 1900 -TA-----CTGATACATAATAGCCAATTGGACTTGATTAC 1933
|| ||||| |||| |||||||||||||||||||||
Sbjct 1901 GTAGATTACTGATTCATATTAGCCAATTGGACTTGATTAC 1940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95732439315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5