BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488003
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11640.1 | Symbols: | Thioredoxin superfamily protein | chr... 1493 0.0
AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 244 9e-64
> AT5G11640.1 | Symbols: | Thioredoxin superfamily protein | chr5:3741996-3743979
FORWARD LENGTH=1050
Length=1050
Score = 1493 bits (808), Expect = 0.0
Identities = 854/877 (97%), Gaps = 0/877 (0%)
Strand=Plus/Plus
Query 1 GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60
Query 61 TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC 120
Query 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180
Query 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCT 240
Query 241 GATAGTTTACTCTATGCTAAGATCTTTCTCATAGCAGTTTCATTGATTATGGATTATCGA 300
||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||
Sbjct 241 GATAGTTTACTCTATGCTAAGATCTTTCTTATTGCGGTTTCGTTGATTATGGATTATCGA 300
Query 301 GTGGCGATCTGGTTTAGTGTCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGGCGGTCTGGTTTAGTATCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360
Query 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTTACACCTATGCAATTGGAGGATTTGTTATCA 420
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTAACACCTATGCAGTTGGAGGATTTGTTATCA 420
Query 421 GATGGGAGCACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATGGTAACACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480
Query 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAACAATCTTTTGTCT 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAATAATCTTTTGTCT 540
Query 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600
Query 601 GCGGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCTGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660
Query 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720
Query 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGATCATAGCTGGAG 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGAACATAGCTGGAG 780
Query 781 AAAACGAGTTAACTGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AAAACGAGTAAACGGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840
Query 841 CAACGCACCATCGGACTATCACATTCGTATGTTTATT 877
|||| |||||| |||||| ||||||||||||||||||
Sbjct 841 CAACACACCATTGGACTACCACATTCGTATGTTTATT 877
Score = 189 bits (102), Expect = 5e-47
Identities = 125/135 (93%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 878 AAAAAA-GACAGATTATATTTTAGTGCTATAGAGAG--AG-AAGATTCTGTTGAAATTTT 933
|||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 916 AAAAAAGGACAGATTATATTTTAGTGCTATAGAGAGATAGAAAGATTCTGTTGAAATTTT 975
Query 934 ATGGGGCTTGAATTTCGACAAAGAATTCTTGAATAGGATGGTAA--TGAAATCTCAATTT 991
|||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 976 ATGGGGATTGAGTTTCGACAAAGAATTCTTGAATACGATGGTAAAATGAAATCTCAATTT 1035
Query 992 CTGACTTTTAAATTT 1006
|||||||| ||||||
Sbjct 1036 CTGACTTTGAAATTT 1050
> AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17310.1);
Has 90 Blast hits to 90 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3740460-3742139
FORWARD LENGTH=653
Length=653
Score = 244 bits (132), Expect = 9e-64
Identities = 140/144 (97%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 1 GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 510 GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 569
Query 61 TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 570 TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC 629
Query 121 TCCGCCGCACCGTACACTTCTCAT 144
||||||||||||||||||||||||
Sbjct 630 TCCGCCGCACCGTACACTTCTCAT 653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5