BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488003 Length=1006 Score E Sequences producing significant alignments: (Bits) Value AT5G11640.1 | Symbols: | Thioredoxin superfamily protein | chr... 1493 0.0 AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 244 9e-64 > AT5G11640.1 | Symbols: | Thioredoxin superfamily protein | chr5:3741996-3743979 FORWARD LENGTH=1050 Length=1050 Score = 1493 bits (808), Expect = 0.0 Identities = 854/877 (97%), Gaps = 0/877 (0%) Strand=Plus/Plus Query 1 GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60 Query 61 TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC 120 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC 120 Query 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCCGCCGCACCGTACACTTCTCATCGACTCTTCGACAGAGAAATCCAAGCATTTCTAGCG 180 Query 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTTCTTATGTTTTCCGCCATTAAGATGGTGAGGGAGGAAACATGGGAAGCTTTCGTTGCT 240 Query 241 GATAGTTTACTCTATGCTAAGATCTTTCTCATAGCAGTTTCATTGATTATGGATTATCGA 300 ||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||| Sbjct 241 GATAGTTTACTCTATGCTAAGATCTTTCTTATTGCGGTTTCGTTGATTATGGATTATCGA 300 Query 301 GTGGCGATCTGGTTTAGTGTCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGGCGGTCTGGTTTAGTATCATATTTTCAGTTATATATCTATTAGCTCAACAACCAGCA 360 Query 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTTACACCTATGCAATTGGAGGATTTGTTATCA 420 ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 361 TTTAGTAAACTAGGAACTGCGAAGAAGCTAACACCTATGCAGTTGGAGGATTTGTTATCA 420 Query 421 GATGGGAGCACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GATGGTAACACAACAAAATACTGGTTGATAGAATTCTTTGCATGTAGTTCATCCAAGTGT 480 Query 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAACAATCTTTTGTCT 540 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 GTTCGTTCTAGCCGTTGCTTTCCTGAGCTCTCCATCACGTACTCGAATAATCTTTTGTCT 540 Query 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TTTGGAACTGTCGATCTTGGACTTTTCCCTAATACTGCGGCAAAGTTTGGAATATCTCTT 600 Query 601 GCGGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GCTGGTGGAATGTCTCAGCTTCCCACATACATATTGTTTGAAAAGGGTGTCGAAGTTTCT 660 Query 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CGGTTCCCAGACTTTTATGTTGACGCTGCACCTTCTTTACCCATAACCAAGAAACTTTTG 720 Query 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGATCATAGCTGGAG 780 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 721 TGTCAACATTTTGAGCTTGATCGGCTTCTGCTCGACTATATAAACGGAACATAGCTGGAG 780 Query 781 AAAACGAGTTAACTGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840 ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AAAACGAGTAAACGGATATACGACTATCTGGCTTCTCCTGCAAGAGCAGTATGAACACAT 840 Query 841 CAACGCACCATCGGACTATCACATTCGTATGTTTATT 877 |||| |||||| |||||| |||||||||||||||||| Sbjct 841 CAACACACCATTGGACTACCACATTCGTATGTTTATT 877 Score = 189 bits (102), Expect = 5e-47 Identities = 125/135 (93%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 878 AAAAAA-GACAGATTATATTTTAGTGCTATAGAGAG--AG-AAGATTCTGTTGAAATTTT 933 |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 916 AAAAAAGGACAGATTATATTTTAGTGCTATAGAGAGATAGAAAGATTCTGTTGAAATTTT 975 Query 934 ATGGGGCTTGAATTTCGACAAAGAATTCTTGAATAGGATGGTAA--TGAAATCTCAATTT 991 |||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 976 ATGGGGATTGAGTTTCGACAAAGAATTCTTGAATACGATGGTAAAATGAAATCTCAATTT 1035 Query 992 CTGACTTTTAAATTT 1006 |||||||| |||||| Sbjct 1036 CTGACTTTGAAATTT 1050 > AT5G11630.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:3740460-3742139 FORWARD LENGTH=653 Length=653 Score = 244 bits (132), Expect = 9e-64 Identities = 140/144 (97%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1 GAGATAGCAAAAATGGAGAAGAAGCGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 60 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 510 GAGATAGCAAACATGGAGAAGAAACGCGAAGGAGTAATCGAAGGAATGAGTCGGATCGTA 569 Query 61 TCAGATCCTTACTATTTCCTCCATTTCATGGCCTTTTTCTCTTACCTTCCGATTCGTAGC 120 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 570 TCAGATCCTTACTACTTCCTCCATTTCATGGCCTTTTTCTCTTACCTCCCGATTCGTAGC 629 Query 121 TCCGCCGCACCGTACACTTCTCAT 144 |||||||||||||||||||||||| Sbjct 630 TCCGCCGCACCGTACACTTCTCAT 653 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49279698207 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5