BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488004
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11650.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2396 0.0
> AT5G11650.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:3744980-3747125 FORWARD LENGTH=1571
Length=1571
Score = 2396 bits (1297), Expect = 0.0
Identities = 1450/1521 (95%), Gaps = 21/1521 (1%)
Strand=Plus/Plus
Query 32 tttatttttacgatttgtgtttttgatttttcCGGCGATGGCGTCAAC-TCCGGCGGAAA 90
||| ||||||| ||||||| |||||| ||||||||||||||||||||| | |||||||||
Sbjct 54 TTT-TTTTTACTATTTGTGATTTTGAATTTTCCGGCGATGGCGTCAACGT-CGGCGGAAA 111
Query 91 TGGAACAATTGACATCAGGCGCGAGTAATCGGATAATATTTATCTTGAGAACGCTAAGGA 150
|||| ||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 112 TGGACCAATTAACATCAGGCGCGAGCAATCGGATAATATTTATCTTGAGAACGCTTAGGA 171
Query 151 AGTgtctcgtcttcgttctctctctcgtcctttctcttctccttattcttcgtctccgtc 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 AGTGTCTCGTCTTCGTTCTCTCTCTCGTCCTTTCTCTTCTCCTTATTCTTCGTCTCCGTC 231
Query 211 ctcgtcgccgtgtctcgcctcttTCATCGCCGGAGGAGGAGGCTGTTCCGGCTCCTTCGA 270
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 232 CTCGTCGCCGTGTCTCTCCTCTTTCATCGCCTGAGGATGAGGCTGTTCCGGCTCCTTCGA 291
Query 271 GGCGATGGAGGCGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 330
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGCGATGGAGACGGAAGATGGCGTGGAAGCTGGAGGAGGAAGATACGGCTAGACGTCGTT 351
Query 331 CCTTAGCAGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTATG 390
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 352 CCTTAGCGGAAGGCGTTGAGATGGCCGGAGATGGAGAGATCTCTTGTTCGTTGTTTTACG 411
Query 391 GCCGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 450
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GACGTCGTGGTAACGCTTTATTCTCTCGGTCGTGGTTGCCTATTTCCGGCGAACTTAGGG 471
Query 451 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCCA 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 472 GGATTTTGATTATTATCCATGGATTGAATGAACACAGTGGAAGATATTCTCAATTCGCTA 531
Query 511 AGCAGTTGAACTCTAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 570
||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGCAGCTAAACGCGAGTAATTTAGGTGTATACGCAATGGACTGGATTGGTCACGGTGGGA 591
Query 571 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GTGATGGTTTGCATGGTTATGTTCCTTCTCTTGATTATGTTGTTTCCGACACTGAAGCTT 651
Query 631 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCATTCTA 690
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 652 TCTTGGAAAAGATTAGGTCTGAGAATCCGGGGGTTCCGTGTTTCCTCTTTGGTCACTCTA 711
Query 691 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATCGAAGATATGTTAGCCG 750
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 712 CCGGTGGAGCTGTGGTTTTGAAGGCAGCTTCATCTCCCTCTATTGAAGATATGTTAGCCG 771
Query 751 GTATTGTCCTAACATCGCCTGCGCTTCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 810
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 772 GTATTGTCCTAACATCGCCTGCACTCCGTGTCAAACCCGCTCATCCCATTGTCGGGGCAA 831
Query 811 TAGCTCCAATCTTCTCATTGGTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 870
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 832 TAGCTCCAATCTTCTCATTGCTCGCACCAAGGTTCCAATTCAAAGGAGCAAACAAGAGAG 891
Query 871 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAATACTCTGATCCGTTAGTCT 930
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 892 GCATTCCGGTCTCAAGAGACCCTGAAGCTCTCTTAGCCAAGTACTCTGATCCGTTAGTCT 951
Query 931 ACACTGGTCCAATTAGGGTCCGAACAGGGCATGAGATTCTTCGCATAACAGCTTACTTGA 990
|||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 952 ACACTGGTCCGATTAGAGTCCGAACAGGGTATGAGATTCTTCGCATAACGGCTTACTTGA 1011
Query 991 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 CCCGGAACTTCAAATCTGTTACAGTGCCTTTCTTTGTTCTCCATGGTACAGAGGACAAAG 1071
Query 1051 TCACTGATCCACTAGCTTCACAAGACTTGTATAATCAGGCTCCATCAATTTTCAAAGACA 1110
||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct 1072 TCACTGATCCACTAGCTTCCCAAGACTTGTATAATCAGGCACCATCAGTTTTCAAAGACA 1131
Query 1111 TCAAACTCTATGACGGTTTCTTACACGATCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1170
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1132 TCAAACTCTATGACGGTTTCTTACACGACCTTCTCTTTGAACCTGAGCGTGAGGAAGTCG 1191
Query 1171 GTCGTGATATCATTGATTGGATGATGAAGCGGCTTGACGATGTTAACGGATCAGCAGCTG 1230
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1192 GTCGTGATATCATAGATTGGATGATGAATCGGCTTGACGATGTTAACGGATCAGCAGCTA 1251
Query 1231 GGATCTGGTAAAAGATCAAATGAGATATCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1290
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1252 GCCTCTGGTAAAAGATCAAATGAGACGTCAGAGGTCTTCATCTTCTATAGATAGTTGTGA 1311
Query 1291 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATA-T-A-A-A--A 1344
||||||||||||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 1312 TACAAATGGTGTGATTGTAAAATCAGAAACCAAGTGTAGGAGATACATAATTACATATCA 1371
Query 1345 --TGGGCTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1402
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 CATGGGTTTAATCTATGAATTGTTTGATTTTTGATATTCGCTGTGACGATCTTTTGGGCC 1431
Query 1403 TATTTTGAAGGGCATTGTTTCCCATTGAGCCtatatggctattatatgtaaatatattta 1462
||||||||||||||||||| || ||||||||||||||| ||| || || | | | |||
Sbjct 1432 TATTTTGAAGGGCATTGTTGCC-ATTGAGCCTATATGGGTAT-ATGTG-A--T-T-TTT- 1483
Query 1463 ttttttattttttgggcaatataatatgtatatttatCAATGTAAATTTGGGTGGAtttt 1522
|||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||
Sbjct 1484 TTTTTTGGTTTTTGGGCAATGTTATATGTATATA-ATCAATGTAAATTTGGGTGGATTTT 1542
Query 1523 ttcatttttCAAATTTAAACT 1543
| |||||||| ||||||||||
Sbjct 1543 T-CATTTTTCTAATTTAAACT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76154226765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5