BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488011
Length=479
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11740.1 | Symbols: AGP15, ATAGP15 | arabinogalactan protein... 494 4e-139
> AT5G11740.1 | Symbols: AGP15, ATAGP15 | arabinogalactan protein
15 | chr5:3784251-3784792 FORWARD LENGTH=542
Length=542
Score = 494 bits (267), Expect = 4e-139
Identities = 435/507 (86%), Gaps = 48/507 (9%)
Strand=Plus/Plus
Query 1 TCTCTCTTTATCTCTCACAACAAATCTCTTTACTATTTGAAATGGCGATCTCTAAGGCTT 60
|||||||||||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 35 TCTCTCTTTATCTCTCACAACAAA-------A-TCTTTGAAATGGCGATCTCTAAGGCTT 86
Query 61 CCATTGTTGTTCTCATGATGGTGATCATCTCCGTCGTTGCTTCAGCTCAATCTGAGGCAC 120
||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||
Sbjct 87 CCATTGTTGTTCTCATGATGGTGATTATCTCCGTCGTTGCATCGGCACAATCTGAGGCAC 146
Query 121 CAGCACCAAGTCCTACATCTGGATCTAGTGCGATCTCAGCGTCTTTCGTGTCAGCTGGTG 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 147 CAGCACCAAGTCCTACTTCTGGATCTAGTGCGATCTCAGCGTCTTTCGTGTCAGCTGGAG 206
Query 181 TTGCAGCAGTCGCGGCCCTTGTTTTTGGCTCTGCTCTTCGGATCTAAGTTACTGTGATGG 240
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 207 TTGCAGCAGTCGCGGCTCTTGTTTTTGGCTCAGCTCTTCGGATCTAAGTTACTGTGATGG 266
Query 241 TGATTTCGTACAGAGATTGTTTTTGC---AT------T-C----------GTCGTCTCGT 280
|||||||||||||||||||||||||| || | | ||||||||||
Sbjct 267 TGATTTCGTACAGAGATTGTTTTTGCGGTATAGGCCATTCATCATTATTCGTCGTCTCGT 326
Query 281 GTGTATTCCTCCGAAGCTTATAGATCTCATTT-CTATTTGGCC-TCTTCTGCTTC-TAC- 336
||||||||| | |||||||||||||||||| ||||||| || |||||| |||| |
Sbjct 327 GTGTATTCCGAAGCAGCTTATAGATCTCATTTTCTATTTGTCCCTCTTCTTCTTCGTTTT 386
Query 337 CT-TC--AATCCTCATATCTGTATGAGGATATCATTATTATTTCTTTTAGAGAGTATTTG 393
|| || |||| |||||||||||||||||||| | | |||||||||| ||||||||||
Sbjct 387 CTATCTTAATCTTCATATCTGTATGAGGATAT--T-ACTATTTCTTTTT-AGAGTATTTG 442
Query 394 TGGTTT-GTGATTTTCTAGACgatttattattattagatatgtgatatggtttttgatat 452
|||||| ||||||||||||||||||| ||| | | | | | |||||||||||||||||
Sbjct 443 TGGTTTTGTGATTTTCTAGACGATTTCTTAGT-T-A--T--GCGATATGGTTTTTGATAT 496
Query 453 gatatatggatcttattctatttattt 479
||||| | ||||||||||||||||||
Sbjct 497 GATAT--GAATCTTATTCTATTTATTT 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22806302738
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5