BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488015
Length=1741
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11780.1 | Symbols: | unknown protein; Has 37 Blast hits to... 2418 0.0
> AT5G11780.1 | Symbols: | unknown protein; Has 37 Blast hits
to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 3; Plants - 34; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr5:3793858-3796142 FORWARD
LENGTH=1744
Length=1744
Score = 2418 bits (1309), Expect = 0.0
Identities = 1613/1754 (92%), Gaps = 44/1754 (3%)
Strand=Plus/Plus
Query 1 CCTTCCAACTTCCCAAAATTCAAAATCTCTTCTCTGTCACCGAAAAATTCCGAAAATGCA 60
||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 16 CCTTCCAACTTCCCAAAATTCAAAATCCCTTCTCTGTCACCGGAAAATTCCCAAAATGCA 75
Query 61 ACCTCCGATTTGCAAACCCAGACCCCAGAGTCACCTCGAATTTCTGAAACCGCTTCTCAA 120
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 76 ACCTCCGATTTGTAAACCCAGACCTCAGAGTCACCTCGAATTTCTGAAACCGCTTCTCAA 135
Query 121 TGACTCGATCAAGCAGCTCCTGTTGCAGTACCGGA-GCGGACGAACCAATTTCTCCGATT 179
||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||
Sbjct 136 TGACTCGATCAAGCAGCTCTTGTTACAGTACC-GAGGCGGACGAACCAATTTCTCCGATT 194
Query 180 TCGACTCCATCTTCACTCGTATTCTTAACGATCTTCCCGAACCACCACCTCTCGAACTCG 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 195 TCGACTCCATTTTCACTCGTATTCTTAACGATCTTCCCGAACCACCACCTCTCGAGCTCG 254
Query 240 TCTGGTTCTATTCCGCCATCAGATTCTACTCTTCGAAATTAGCTTTCCGGGATGATTCCG 299
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 255 TCTGGTTCTACTCCGCCATCAGATTCTACTCTTCCAAGTTAGCTTTCCGGGATGATTCCG 314
Query 300 TTAGGTTAACGTCGAGTTTCTTCCAGCTGCTAGTTTCGTTTTCCGATTCGTTTTCCGATT 359
|||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 315 TTAGGTTAACTTCGTGTTTCTTCCAGCTGATAGTTTCGTTTTCCGATTCGTTTTCCG--- 371
Query 360 CGTTTTCCGGCGTTAAGAAGGTAGCTCTGTTATCTCCCGTTGTTTACCAGTTGAGTCGTC 419
| | |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 372 -G---T-----GTTAAGAAGGTATCGCTGTTATCTCCCGTTGTTTACCAGTTGAGTCGTT 422
Query 420 TGGTT-TGTTCTAGGAGGAGAGACGCTTTGAGCTTGTTAGAGGGGATTGTGAGCTATATT 478
| ||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 423 TAGTTAT-TTCTAGGAGGAGAGATGCTTTGAGCTTGTTAGAAGGGATTGTGAGCTATATT 481
Query 479 AGCATGTACTGTGTCGAGGAACCTGGAGATGAATATGATGATGTGTTGATGGTCTCTGGG 538
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 482 AGCATGTACTGTGTCGATGAACCTGGAAATGAAGATGATGATGTGTTGATGGTCTCTGGG 541
Query 539 TTTAGTTTTGCTGATTTGAGTCGTGTTTGGATTGTGGATGAAGTGGAAGATAATTGTAGA 598
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 542 TTTAGTTTTGCTGATTTGAGTCGAGTTTGGGTTGTGGATGAAGTGGAAGATAATTGTAGA 601
Query 599 GTTGAGGATTGTTTGGAGATCTTCATGCCATTTGTTAGTGAAACTTTGCGTAAAGAGATG 658
|||||||||||||||||| | ||||||||||||| |||||||| |||||||||||||||
Sbjct 602 GTTGAGGATTGTTTGGAGGTGTTCATGCCATTTGCTAGTGAAATTTTGCGTAAAGAGATC 661
Query 659 GATTCTGAGTCCTGTCGCGTTGGTTACTTAGCTGGAATCATAGCTTCTCAGGTGTTCTTG 718
||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 662 GATTCTGAGTCCTGTGGCGTTGGTTACTTAGCTGGAATCGTAGCTTCTCAGGTTTTCTTG 721
Query 719 CTCAGTTTGTGCTCGAGGTTTGATTTGGAGTTAAGTAGATCCGAGCTAGAAAAAGATCTG 778
||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 722 CTCAGTTTGTGCTCGAGGTTTGATTTGGACTTAGGTAGATCCGAGCTAGATAAAGATCTG 781
Query 779 CGGGAATCTGTGCTTCAGATGATTTCTGGGTTCCACAGTTGCTACTTTTTTGATGTCATT 838
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 782 CAGGAATCTGTGCTTCAGATGATATCTGGGTTCCACAGTTGCTTCTTTTTTGATGTCATT 841
Query 839 CTCAAGATGCTGCTGCTGGAACCATATCTGCATCTAACTTCACTACT----G-GG-TCCG 892
||||||| |||||||||| ||||||||||||||||||||| || | | || |||
Sbjct 842 CTCAAGA---TGCTGCTGGAGCCATATCTGCATCTAACTTCATTAATGGGAGTGGTTCCA 898
Query 893 GAAGATGAAGCTA-TTTTAACGGAAATCATAACAGAAGCTGTGATTAAGTCAGTGGAGAA 951
||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 GAAGATGAAGC-ATTTTTAACGGAAATCATAACAGAAGCGGTGATTAAGTCAGTGGAGAA 957
Query 952 GCTATTCTTCAACCCTGGAAATGGAACTTTGCAAAGAAGTTTACACTTGAAGAACATTGC 1011
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 958 GCTATTCCTCAACCCTGGAAATGGAACTTCACAAAGAAGTTTACACTTGAAGAACATTGC 1017
Query 1012 TATCAACTGGTTGTTTCTTTTTGACAAGACTATGGCTTCCCTAAGGAGATATAAAGATGA 1071
||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |
Sbjct 1018 TATCAACTGGTTGTTTCTTTTTGACAAGACTATGGCTTCTCTAAGGAGAAACAAAGATCA 1077
Query 1072 AGAAAAAACCAGCAGGTACATGAACATGTTCTCCTATTCACTTATTCCTCACCACTTGAT 1131
|||||||| ||||| ||||| ||||||||||||| |||||||||||||| | || |||||
Sbjct 1078 AGAAAAAATCAGCATGTACACGAACATGTTCTCCAATTCACTTATTCCTTATCATTTGAT 1137
Query 1132 CAATTGGGTAATCAGTCAAGGTGAAGTGATTAGAGATGCAGACGCACTGAGAAACTTGAC 1191
||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||
Sbjct 1138 CAATTGGGTAATCAGTCAAGGTGAAGTGATTAGAGATGCAGACACACTAAGAAATTTGAC 1197
Query 1192 TCCCGCATCCTTCATTGAATGGCTTGTATCACTTGAAGAGCAAGGACTAAGGGTGTTTAA 1251
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1198 CCCCGCATCCTTCATTGAATGGCTTGTATCACTGGAAGAGCAAGGACCAAGGGTGTTTAA 1257
Query 1252 CTGTGACCATTCCAAAAACTATGCCAGAA-CTGTGATTCAAAGGTCAAGACCAGATCTCA 1310
||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||||
Sbjct 1258 CTGTGACCATTCCAAAAACTACGCCA-AATCTGTGATTCACAGGTCAAGACCAGATCTCA 1316
Query 1311 GTCTCGG-AGCCACATTGCTGAAACGACAAGAGGAGTTTGATCAAGATGCAGACATGGCT 1369
|| |||| | ||||||||| ||||| | |||||||||||||||||||| |||||||||||
Sbjct 1317 GTATCGGGA-CCACATTGCAGAAACAAGAAGAGGAGTTTGATCAAGATACAGACATGGCT 1375
Query 1370 GATGATTACACTGCGTCATCTTTCTCAATTCTCAGCAGCAACACAAGAAAGCGTAAAGAA 1429
||||| | | || ||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1376 GATGAACAAAATGTGTCATCTATCTCAATTCTCAGCAGAAACACAAGAAAGCGTAAAGAA 1435
Query 1430 GAGAGGGATAATAAGGAGGGAGAAACGAAAGTGAAGCTCTTCAAACATAGACACAGCAAC 1489
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1436 GAGAGGCATAATAAGGAGGGAGAAACGAAAGTGAAGCTCTTCAAACATAGACATAGCAAC 1495
Query 1490 ATTCAGGAGAACTCCAAGTTTCAACCTTTTGTCTTCTCGGATGGTTTGGTGAAGGGGACT 1549
|||| |||||||||||||||||||||||||||||||||| | |||||||||| |||| |
Sbjct 1496 CTTCAAGAGAACTCCAAGTTTCAACCTTTTGTCTTCTCGGGTAGTTTGGTGAATGGGAGT 1555
Query 1550 GAGGTTGAAGTTTCAGACATGGAGCTATGAGTCTAAACCACTTGTAGATAGTGAAATCGG 1609
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1556 GAGGTTGAAGTTTCAGACATGGAGCTATGAGTCTAAACCACTTGTAGTTGGTGAAATCGA 1615
Query 1610 CTTAATATTGTCTCAAATATGGTAGAGATGTAAGAATGCTGCTGAAGTAATTGTTGTCTA 1669
||||||| | | || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1616 CTTAATAAT--CACA--TATGGTAGAGATGTAAGAATGCTGCTGAAATAATTGTTGTCTA 1671
Query 1670 GAGATTATA-A-CAAGTTCACTTTTGTAACTATTTAGAATCTTCGTAATTCATATCGTAA 1727
||||||||| | ||||||||| | |||||| ||||||||||||| | | || |||||
Sbjct 1672 GAGATTATATAACAAGTTCACATCTGTAACAATTTAGAATCTTC--A-T--AT--CGTAA 1724
Query 1728 TGTAAACCCGTGAA 1741
||||||| ||||||
Sbjct 1725 TGTAAACTCGTGAA 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86093934675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5