BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488016
Length=1340
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11790.1 | Symbols: NDL2 | N-MYC downregulated-like 2 | chr5... 1977 0.0
> AT5G11790.1 | Symbols: NDL2 | N-MYC downregulated-like 2 | chr5:3799550-3802792
FORWARD LENGTH=1463
Length=1463
Score = 1977 bits (1070), Expect = 0.0
Identities = 1195/1254 (95%), Gaps = 13/1254 (1%)
Strand=Plus/Plus
Query 88 AAGGAGATGGCGGATTCAAGCGATTCTGTCTCCATTGATATGGAGGCATTGTCTCTTGGA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AAGGAGATGGCGGATTCAAGCGATTCTGTCTCCATTGATATGGAGGCATTGTCTCTTGGA 186
Query 148 GGACAGGAACACCTTGTGGAGACTACTTATGGCCCGGTTTGTGTTGTCGTTTGTGGAGAT 207
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 187 GGACAGGAACACCTTGTGGAGACTACTTATGGCCCGGTTTGTGTTGCCGTTTGTGGAGAT 246
Query 208 CCAGATAAACCAGCTCTTATCACATATCCTGATATTGCTCTAAATTATATGTTCTGTTTT 267
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 247 CCAGATAAACCAGCTCTTATCACTTATCCTGATATAGCTCTTAATTATATGTTCTGTTTT 306
Query 268 CAAGGATTATTGTTTTGTCCAGAAGCTAGTTCTTTGTTACTCCACAACTTTTGCATATAT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CAAGGATTATTGTTTTGTCCAGAAGCTAGTTCTTTGTTACTCCACAACTTTTGCATATAT 366
Query 328 CACATCAGTCCTCTTGGCCATGAGTTGGGAGCTCCAATGATCAGTGTTGATGCTCCTTTG 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CACATCAGTCCTCTTGGCCATGAGTTGGGAGCTCCAATGATCAGTGTTGATGCTCCTTTG 426
Query 388 CTCTCTGCTGATGACTTAGCGGACCAGATAGTTGAGGTTCTTAATTTTTTCGGACTTGGT 447
||||| |||||||||||||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 427 CTCTCAGCTGATGACTTAGCAGACCAGATAGTCGAGGTTCTTAATTATTTCGGACTTGGT 486
Query 448 GCAGTAATGTGTATGGGTGTCACAGCAGGAGCCTACATTCTGACCTTATTTGCTATGAAG 507
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 487 GCAGTAATGTGTATGGGTGTCACAGCAGGAGCATACATTCTGACCTTATTTGCTATGAAG 546
Query 508 TACAGGCAAAGAGTTCTGGGCTTAATACTCGTCTCTCCCCTGTGCCAAGCGCCTTCTTGG 567
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 547 TACAGGCAGAGAGTTCTGGGCTTAATTCTCGTCTCTCCACTGTGCCAAGCGCCTTCTTGG 606
Query 568 TCAGAATGGTTGTGCAATAAGGTTATGTCTAATTTACTTTACTACTATGGTACGTGTGGA 627
||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct 607 TCAGAATGGTTGTGCAATAAGGTCATGTCTAATTTGCTTTACTATTATGGTACATGTGGA 666
Query 628 GTGGTTAAGGAACTGTTACTAAAACGGTACTTCAGCAAGGAAGTTCGTGGTAATGGTCAA 687
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAGGAAGTTCGTGGTAATGGTCAT 726
Query 688 GTTCCAGAATCAGATATCGTTCAAGAATGCAGAAGATTACTTAGTGAGCGGCAAAGTACA 747
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 727 GTTCCAGAATCAGATATTGTTCAAGAATGCAGAAGATTACTTAGTGAGCGGCAGAGTACA 786
Query 748 AATGTATGGAGATTCCTTGAGGCAATCAATGGGAGAGTGGATCTTAGTGAAGGATTAAGG 807
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 787 AATGTATGGAGATTCCTTGAGGCAATCAACGGGAGAGTGGATCTTAGTGAAGGGTTAAGG 846
Query 808 AAATTGCAATGCAGAAC-TCTAATATTCATTGGTGAAAATTCTGCCTACCACTCCGAGGC 866
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AAATTGCAATGCAGAACGT-TAATATTCATTGGTGAAAATTCTGCCTACCACTCCGAGGC 905
Query 867 CGTTCACATGACCACCAAACTAGACAGACGATATGGCGCATTAGTCGAGGTGCAGGGTAG 926
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 906 TGTTCACATGACCACCAAACTAGACAGACGATACGGTGCATTAGTCGAGGTGCAGGGAAG 965
Query 927 CGGGTCGTTGGTGAGTGAAGAACAGCCACAGGCGATGGTAATACCAATGGAATACTTTTT 986
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 966 CGGGTCGTTGGTGAGCGAAGAACAGCCACAGGCGATGATAATACCAATGGAATACTTTTT 1025
Query 987 GATGGGATATGGCTTGTATCGTCCAACACAGAGCGTAAGCCCGAGAAGTCCTTTGAGCCC 1046
||||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1026 GATGGGATATGGCCTGTATCGTCCTACACAGAGCGTAAGTCCAAGAAGTCCTTTGAGCCC 1085
Query 1047 AACCCGAATCTCTCCGGAGCTTCTATCCCCTGAAAACATGGGTTTGAAACTCAAGCCGAT 1106
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1086 AACCCGAATCTCTCCGGAGCTTCTCTCCCCTGAAAACATGGGGTTGAAACTCAAGCCGAT 1145
Query 1107 TAAGACACGACTCGCCCTATAGCCCTGCCTCCTCTGCTACAGACATTTACATATACACAA 1166
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1146 AAAGACACGACTCGCTCTATAGCCCTGCCTCCTCTGCTACACACATTTACATATACG-A- 1203
Query 1167 CATGTGAATCATACACCACATAAAAATCGCCATTGCTGGAGTTGGAGCTGTTCCTCTGTT 1226
|||||| ||| | | |||| |||||| |||||| |||| |||||||||||||||||||
Sbjct 1204 CATGTG--TCA--C-C-ACATCAAAATCACCATTGTTGGA-TTGGAGCTGTTCCTCTGTT 1256
Query 1227 ATGATTTGAGCTGTagatatagacagagatatattgatcatctatatatagagagagaga 1286
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1257 ATGATTTGAGCTGTAGATATAGACAGAGATATATTGATCATCTATATATAGA-A-AGAGA 1314
Query 1287 gggagatgaagaagagTaaaaaaaaaGGATGGGGGAGGGATTGATTTATGGTAG 1340
|||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 1315 GGGAGATGAAGAAGAGTAAAAAAAGGGGATGGGGAAGGGATTGATATATGGTAG 1368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65963516130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5