BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488017
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11800.1 | Symbols: KEA6, ATKEA6 | K+ efflux antiporter 6 | ... 3075 0.0
> AT5G11800.1 | Symbols: KEA6, ATKEA6 | K+ efflux antiporter 6
| chr5:3803336-3808207 REVERSE LENGTH=2231
Length=2231
Score = 3075 bits (1665), Expect = 0.0
Identities = 1873/1967 (95%), Gaps = 40/1967 (2%)
Strand=Plus/Plus
Query 54 TCCGGTTTAATCCAGAACCAGTTCTTCTGCCATGGTGGAA-GAAGGAGGAAGAAGAAGA- 111
||||||||||||||||||||||| |||||||||||||||| ||| || |||||||||||
Sbjct 108 TCCGGTTTAATCCAGAACCAGTTGTTCTGCCATGGTGGAAGGAA-GAAGAAGAAGAAGAT 166
Query 112 ---AG--ATCCTCTCAACAACTAGCTCTCCTCTTACTTTTACTCTCCTTCTTCCTCTGCT 166
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 TCTCGCTCTCCTCTCAACAGCTAGCTCTCCTCTTACTTTTACTCTCCTTCTTCCTCTGCT 226
Query 167 TCTCCGTCGTGTCTCCTCGAGCTATATCTGATTCGGATCTGTTGGAAGAATCCGTCGCCA 226
||||||||| |||||||||||||||||||||||||||||| |||| ||| | |||||||
Sbjct 227 TCTCCGTCGCGTCTCCTCGAGCTATATCTGATTCGGATCTACTGGATGAAACAGTCGCCA 286
Query 227 ACTCCTCCTCCTCCGTCGCATCTCTCAACG------CTTCTTCTTCAATTGTTAAG-CTC 279
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||
Sbjct 287 ACTCCTCCTCTTCCGTCGCATCTCTCAACGCTTCTTCTTCTTCTTCTCTTGTTAAGCCT- 345
Query 280 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTCGAAAAAGAGTTCAACGAAAGC 339
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 346 AAGGAAGGTAGCTTCGCCGACATCATCGATCGTGCTCTTGAAAAAGAGTTCAATGAAAGC 405
Query 340 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GACCAGAATGAAGTGGCTGATCCTGGAAGCTTCAATAACAGTGTAGCTGGACAACAGGCT 465
Query 400 GTTCTGGAAACTGTAGCCAGAGTAAAGTCAACCAAGAAAAATGAGACAAAAGAGGACAAG 459
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 466 GTTCTGGAAACTGTAGCCCGAGTAAAGTCGACCAAGAAAAATGAGACAAAAGAGGAGAAG 525
Query 460 CGTTTCCAACTCCATGATGTTTTCAATTTGAACAATGATAACAGAGCTGAGGACACTCCT 519
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 526 CGTTTTCAACTCCATGATGTTTTCAACTTGAACAATGATAACAGAGCTGAGGACACTCCA 585
Query 520 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ACTCTCATTGATCGAAAAGACAATGTCTTCATCATATCCAATTCCAAATCAAAGTATCCA 645
Query 580 GTATTGCAGCTAGACTTGAGACTGATATCGGACCTGGTGGTTGTCATTGTATCTGCAACT 639
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 646 GTATTGCAGCTAGACTTGAGACTGATATCAGACCTGGTGGTTGTCATTGTATCTGCAACT 705
Query 640 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TGTGGTGGTATCGCCTTTGCTTGTGCTGGACAGCCGGTGATAACTGGATATTTGCTAGCA 765
Query 700 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGATCTATCATTGGGCCTGGAGGATTGAACTTCATCAGTGAGATGGTCCAGGTTGAAACA 825
Query 760 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTCGCTTTGGGTCTAGAGTTCTCCACTGCT 819
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 826 GTTGCCCAGTTTGGTGTGGTATTTCTGCTCTTTGCTTTGGGTCTAGAGTTCTCCACTGCT 885
Query 820 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTAGGAGGCCTTCTTCAAATTCTTCTATTC 879
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 886 AAGCTTAAAGTTGTTCGATCAGTTGCTGTTCTGGGAGGCCTTCTTCAAATTCTTCTATTC 945
Query 880 ATGTTCTTGTGCGGGATCACAGTGTCGTTATGCGGTGGTAAACATTCGGAGGGGGTGTTT 939
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 946 ATGTTCTTGTGCGGTATCACAGTGTCGTTATGCGGTGGTAAACGTTCGGAGGGGGTATTT 1005
Query 940 GTAGGCGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGaaaaa 999
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTAGGAGCCTTTTTGTCAATGTCATCAACTGCGGTGGTGCTGAAGTTTCTCATGGAAAAG 1065
Query 1000 aaTTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AATTCAACTAATTCTCTTCATGGCCAAGTTACGATTGGAATCCTAATTCTTCAGGACTGT 1125
Query 1060 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCCGTTCTTGAGGGAAATTCTGGCATTGTTCAT 1119
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1126 GCTGTGGGTTTGCTGTTTGCTTTGCTTCCAGTTCTCGAGGGAAATTCTGGCATTGTTCAT 1185
Query 1120 GGAATGTTGTCAATGGGAAAAGTGGTGGTTGTGTTACTTTCGTTTTTGGCAGTTTTGTCA 1179
|||||||||||||| ||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 1186 GGAATGTTGTCAATAGGAAAAGTGGTGGTTTTGTTGCTTTCGTTTTTGGCTGTTTTGTCA 1245
Query 1180 ATATTATCACGGACATTTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 ATATTATCACGGACATGTATTCCTTGGTTGCTGAAGCTAATGGTCAGCTTATCGTCACAG 1305
Query 1240 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 ACAAATGAACTCTATCAGTTAGCGGCTGTTGCGTTTTGTCTACTTGTAGCCTGGTGTAGT 1365
Query 1300 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCCGCGGGGGTCATGATATCCACT 1359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1366 GATAAGCTGGGATTAAGTCTTGAATTGGGTTCTTTTGCTGCGGGGGTCATGATATCCACT 1425
Query 1360 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCC 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 ACTGATCTCGCTGAACATACATTGGAGCAAATCGAACCCATCCGTAATTTATTTGCTGCT 1485
Query 1420 CTTTTCCTAGCCAGCATTGGAATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1486 CTTTTCCTAGCCAGCATTGGGATGTTAGTTAATGTCCATTTTCTGTGGACACATGTGGAT 1545
Query 1480 ATACTGTTAGCCTCTGTGATATTAGTAATTATAATAAAGACAACAATAGTTACAACCGTT 1539
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1546 ATACTGTTAGCCTCTGTGATATTAGTTATTATTATAAAGACAACAATAGTTACAACCGTT 1605
Query 1540 GTTAAAGGATTTGGATACAACAATAAGACGGCTCTCCTGGTTGGAATATCTCTGGCTCAG 1599
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1606 GTTAAGGGATTTGGATACAACAATAAGACGGCTCTTCTGGTTGGAATATCTCTGGCTCAG 1665
Query 1600 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 ATAGGGGAGTTTGCCTTTGTACTACTTAGCCGTGCCTCCAATCTTCACCTCATCGAAGGG 1725
Query 1660 AAACTCTATTTGCTTCTCCTCGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGATT 1719
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1726 AAACTCTATCTGCTTCTCCTTGGGACAACCGCTCTAAGCCTGGTTACGACACCGCTGGTT 1785
Query 1720 TTCAAAATGATACCAGCAGTTGTGCATCTTGGGATATTGTT-AAAGTGGTTTTCTCCAGA 1778
||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||
Sbjct 1786 TTCAAAATGATACCAGCAGTTGTACATCTTGGGATATTGTTGAAA-TGGTTTTCTCCAGA 1844
Query 1779 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGCGGTAAACAACGGGTGATTCT 1838
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 1845 CAGTACTATAGAGAAAGGAGAAATTGTAAGATCAGAAAGTGGGAAACAACGGATGATTCT 1904
Query 1839 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAT-TGTTTCTTCTCAACTGAAGTTT 1897
|||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||
Sbjct 1905 AATGTCACGTCAATCCCACAGCTCCTAAAACCACAAAATGTT-CTTCTCAACTAAAGTTT 1963
Query 1898 GGTACAC-CAATCAATTTTGACCCaaaaaaaaaaTGTGGAAAGGAGAAGAAGAGCTACAG 1956
||||||| |||||||||||||| |||| ||||||||||||| |||||| || | |
Sbjct 1964 GGTACACTCAATCAATTTTGAC--AAAAGAAAAATGTGGAAA--AGAAGA-GA---A-A- 2013
Query 1957 ATTTTAACACAGATTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2003
| | ||||||||||||||||||||||||||||||||||||
Sbjct 2014 A----A-----GATTTTAACACTAACATTGTTTGTTTCCTGGGAGTA 2051
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99246477465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5