BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488018
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11810.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1820 0.0
AT5G11820.1 | Symbols: | Plant self-incompatibility protein S1... 158 2e-37
> AT5G11810.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:3808720-3810748
FORWARD LENGTH=1248
Length=1248
Score = 1820 bits (985), Expect = 0.0
Identities = 1164/1250 (93%), Gaps = 14/1250 (1%)
Strand=Plus/Plus
Query 1 CTTTTGACAAGAATGGCGGACAAACCAAGCAGATCACTGGTATTGTACGGAGACGGCTTG 60
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 8 CTTTTGACAACAATGGCGGACAAATCAAGCAGATCACTGATATTGTACGGAGACGGCTTG 67
Query 61 GCTCGATTCGTCGATCCGTCAAATACCCACGTCCATTCTCTTGCTTCTGTCGGTAGC-TG 119
|||||||| |||||||||||||||||| || |||||||||||||||| |||| || | ||
Sbjct 68 GCTCGATTTGTCGATCCGTCAAATACCAACATCCATTCTCTTGCTTCCGTCGCTA-CTTG 126
Query 120 TGGCTTCTTGAGCCTTCCTAATGCACCTCCAGAAACTGACAATGAGAGGACAGTTCGAGA 179
||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 127 TGGCTTCTTGAGCCTTCCTAATGCACCTCCAGAAACTGAGAATGAAAGAATAGTTCGAGA 186
Query 180 ATTCGCCCTTTTGCTGGATGCATCAGAAGCTTATTCGATAGCTAGTGGACTAAAACCAAA 239
|||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 187 ATTCTCCCACTTGCTGGATGCATCCGAAGCTTATTCCATAGCTAGTGGACTAAAACCAAA 246
Query 240 GGGAAATGGAAATGATATCTCAACTTTGGCCGAAAGGTTTATGGGACTCAAGGCTGCTTT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 247 GGGAAATGGAAATGATATCTCAACTTTGGCTGAAAGGTTTATGGGACTCAAAGCTGCTTT 306
Query 300 AGTAACAGATAGTTCTACTCTGACTTCTTTTGGAAAACTGATTGGCTTAGATGTATTACA 359
||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 307 AGTTACGGACAGTTCTACTCTGACTTCTTTCGGAAAACTGATTGGCTTAGATGTATTACA 366
Query 360 ACTTAGTGAAATATGCCAAGAGAGTGATTCCTTTCCTTCTGATGCCACATCATCTAAATT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 367 GCTTAGTGAAATATGCCAAGAGAGTGATTCCTTTCCTTCTGATGCCACATCATCTAAACT 426
Query 420 ACTAAAGCTACTTGGATTTGAAGGAGGAAAGTGCTTGGATGTGAGCCTATATGACTCGGT 479
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 427 ACTAAAGCTGCTTGGATTTGAAGGAGGAAAGTGCTTGGATGTGAACCTATATGACTTGGT 486
Query 480 TTTTGTGCATATCGGGGTTGATCAATATAATAATGGGAACAACAACATGGGAATTATCGA 539
|||||| ||| ||||||||||| |||||||||| |||||||||| |||||||| ||||
Sbjct 487 TTTTGTTCATTTCGGGGTTGATGAATATAATAACGGGAACAACA---TGGGAATTCTCGA 543
Query 540 CTCTTTGATTGGTAGTATTATGAGAATGGCTCAACCAGGTTCAGAGATTGTATCGCGGTT 599
|||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 544 CTCTTTGATTGGCAGTATTATGGGAATGGCTCAACCAGGTTCAGAGATTCTATCGCGGTT 603
Query 600 GCATCTGTCTCTTGTTCTTAGCTATGGTTCTGTCACAGACAAAGATGTTTCAGTTTTTCC 659
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GCATCTGTCTGTCGTTCTTAGCTATGGTTCTGTCACAGACAAAGATGTTTCAGTTTTTCC 663
Query 660 CATCAAGACTCCACAAGAAGACATTAACCCAGCATTTGCAGGACTTGTCCCTCGTCAGAG 719
||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||
Sbjct 664 AATCAAGACTCCACAAGAAGACATTAACCCGGCATTTATAGGACTTGTCCCGCGTCAGAG 723
Query 720 CTACACCATGCGAGGTGAAAAGACACGCGATGATGTTCGGCACTACTGTCCTATGTTGGT 779
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 724 CTACACCATGCGAGGTGAAAAGACACGGGATGATGTTCGGCACTACTGTCCTATGTTGGT 783
Query 780 AGCTCAGTGGCAGCATGCTGTGACCCGGAAAGACTTAGTTGATACATTGTCATTTGAAAC 839
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
Sbjct 784 AGCTCAGTGGCAGCATGGGGTGACCCGGAAAGACTTAGTTGATACCTTATCATTTGAAGC 843
Query 840 TCTTAAAAAGCTCTCTGGAAATCTTGTTATACCGGCTGATCGGTTCATCCATGAAGTTAC 899
||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 844 TCTCAAAAAGCTCTGTGGAAATCTTGTTATACCGGCTGATCGGTTCATCCACGAAGTTGC 903
Query 900 TTTCAAACTTTGGAAGGCCCCAAAATATGGAGCTTAAGCAAAAGTAATCATCTAGTCCGG 959
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TTTCAAACTTTGGAAAGCCCCAAAATATGGAGCTTAAGCAAAAGTAATCATCTAGTCCGG 963
Query 960 ATGAATTTCATACTCTTTCTGCTGTTGGAGTTGATTGTGGATTGA-CTCAAATTTGCTAA 1018
||||||| ||| ||||||| ||||||| ||||| ||||||||||| |||||||||||||
Sbjct 964 ATGAATT-CATTCTCTTTCCGCTGTTGAAGTTGTTTGTGGATTGATCTCAAATTTGCTAC 1022
Query 1019 CTTTACATAAAGGGAAGACACAAAAGCTGTTCTGTTTCTTCTAGACTCCGTATCGTGATA 1078
||||||||||||| ||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1023 CTTTACATAAAGGAAAGACACAAAAGCTGTTCTGTTTCTTCTAGATTATGTATCGTGTTA 1082
Query 1079 TCCATTTCATACACA-AAAA-TAGAGATTTAACATATATCCTGAATTGGTTGGTCATGGA 1136
||||||||||||||| |||| ||||||| |||||||||||||||| | | |||||||||
Sbjct 1083 TCCATTTCATACACACAAAAATAGAGATATAACATATATCCTGAA--G-T-GGTCATGGA 1138
Query 1137 AGTGTTG-GATTATGGATCCTCTTGTACAGGGTGGTAGTTAGTACCGCCGATCCAAGGCA 1195
||||| |||||||||||||||| |||||||||||| |||||||||||||||||| ||
Sbjct 1139 AGTGTAAAGATTATGGATCCTCTTTTACAGGGTGGTAATTAGTACCGCCGATCCAAACCA 1198
Query 1196 TTCTCAATTCATCTCCATAGAGCCTTTGGCCTTTATCGTCTCTTTTGATC 1245
|||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1199 TTCTCAATTCATCTCCATAGAGCCTTTGGCCTTTATTGTCTCTTTTGATC 1248
> AT5G11820.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:3810649-3811176 REVERSE LENGTH=528
Length=528
Score = 158 bits (85), Expect = 2e-37
Identities = 95/100 (95%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 1146 TTATGGATCCTCTTGTACAGGGTGGTAGTTAGTACCGCCGATCCAAGGCATTCTCAATTC 1205
|||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 528 TTATGGATCCTCTTTTACAGGGTGGTAATTAGTACCGCCGATCCAAACCATTCTCAATTC 469
Query 1206 ATCTCCATAGAGCCTTTGGCCTTTATCGTCTCTTTTGATC 1245
|||||||||||||||||||||||||| |||||||||||||
Sbjct 468 ATCTCCATAGAGCCTTTGGCCTTTATTGTCTCTTTTGATC 429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5