BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488020

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11830.1 | Symbols:  | Plant self-incompatibility protein S1...   839    0.0  


> AT5G11830.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr5:3812520-3813044 REVERSE LENGTH=525
Length=525

 Score =  839 bits (454),  Expect = 0.0
 Identities = 495/515 (96%), Gaps = 2/515 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAACCCTAGCAATATTTTGCCTTGTTTTCCAAGTAATCATTCAAACCGGAAACTCA  60
            |||||| |||||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  13   ATGAAAGCCCTAGTAATATTTTGCCTTGTTTTTCAAGTAATCATTCAAACAGGAAACTCA  72

Query  61   GCTGATTCAGGAGATGTTGATTTTTCAATACTCATAAAAAACGAAATGTACAATGTCGAT  120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  73   GCTGATTCAGGAGATGTTGATTTTTCAATACTCATCAAAAACGAAATGTACAATGTCGAT  132

Query  121  AACCCGTCTGTTTTCTACACTTGCCGATCATCAAAGAAAGACATCGGATGGCACAAATCG  180
            |||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct  133  AACCCGTCGGTTTTCTACAATTGTCGATCATCGAAGAAAGACATCGGATGGCACAAATCG  192

Query  181  GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTCATG  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  193  GTTCCATCCTCAGAGTTTCAATGGGAATTCGAAGTTCCTCAGTTTGGTAACGGCGTGATG  252

Query  241  GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  253  GTCCACAATTGTCGTTTCCGGTCGAGCGCAGGAACAGCAAACGTTGAGATCAGGACATTG  312

Query  301  TCTACTACAGCGATGCTATGCGATGGACAAACATGTAAATACGCAATCAGACCTAATGGG  360
            |||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct  313  TCTACTACGGCGATGCTATGCGACGGACAAACATGTAAATATGCAATTAGACCTAATGGG  372

Query  361  ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATTTTTGGAAGGTATATTGAA  420
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  373  ATTTATTTCATTGGTTACGAGTTGTATTCTCCTTATGCTATATTTGGAAGGTATATTGAA  432

Query  421  TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  433  TTGTCGAGGCCCGCGGAGAAGCTAGTTGAGCCGTGGAAACCTTGGTCACCACAACAACTC  492

Query  481  AAAGCTATGTATCGTACAAAACAAATGGTCCATGA  515
            |||| |||| |||||||| ||||  ||||||||||
Sbjct  493  AAAGTTATGCATCGTACACAACA--TGGTCCATGA  525



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5