BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488026
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11860.1 | Symbols: SSP5 | SCP1-like small phosphatase 5 | c... 1853 0.0
> AT5G11860.1 | Symbols: SSP5 | SCP1-like small phosphatase 5 |
chr5:3821803-3823843 REVERSE LENGTH=1431
Length=1431
Score = 1853 bits (1003), Expect = 0.0
Identities = 1168/1245 (94%), Gaps = 22/1245 (2%)
Strand=Plus/Plus
Query 84 TAGTGTATGAGCTAG-TGTTTGCAATTTGACGGCTCTCGGGATCTGATTTATCTCAGGCG 142
||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||| || |
Sbjct 180 TAGTGTATGAGCTAGTTGTTTGTAATTTGACGGCTCTCGGGAACTGATCTATCTCCGGTG 239
Query 143 TCTGGGCTCTGTCGGTAGCTACAGGGGTGAAAGAGAGTTTCTACAAGGCTTTTAATGGAA 202
||| ||| |||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 240 TCTCTGCTTTGTCGGTAGCTACAGGAGTG-AAGAGAGTTTCTACAAGGGTTTTAATGGAA 298
Query 203 GACGATGACTCTCCTTCTTCCCGGGATTTGGATGCACAGAACCCTTATGATCGATTGCTT 262
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 299 GATGATGACTCTCCTTCTTCTCGGGATTTGGATGCACAGAACCCTTATGATCGATTGCTT 358
Query 263 GCTCTAGATACAAGTACCGTAGATTCAAATTGTAACTTGGATTCGGTTTCTGCCATTTAT 322
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 359 GCTCTAGATACAAGTACCGTAGATCCAAATTGTAACTTGGATTCGGTTTCTGCCATTTAT 418
Query 323 CTAGCGATGAAGAGCTCGAAGCTGGAATGTGTTGACGAGCGTGGCCAAGATTCCCTTATA 382
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 419 CTAGCGATGAAGAGCTCTAAGCTGGAATGTGTTGACGAGCGTGGTCAAGATTCCCTTATT 478
Query 383 ACTTCGGTATGCATGGAGGATGAAGAGGATGAGGAACTCGATGAGTTTGATCCTTATCTG 442
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 479 ACTTCGGTATGCATGGAGGATGAAGAGGATGAGGAGCTCGATGAGTTTGATCCTTATCTG 538
Query 443 TTTATCAAGAACTTGCCGAACTTGTCTTCTGTTGTCCCAACTTTCAGGCCGGTCTTGCTT 502
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTATCAAGAACTTGCCGAACCTGTCTTCTGTTGTCCCAACTTTCAGGCCGGTCTTGCTT 598
Query 503 CCTAAACAAACCCGGAGCTGTCCTCCTATTTCTCTAGTCCTAGACCTTGATGAAACTCTT 562
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 599 CCTAAACAAACCCGAAGCTGTCCTCCTATTTCTCTTGTCCTAGACCTTGATGAAACTCTT 658
Query 563 GTGCACTCGACTCTAGAACCGTGTGGTGAGGTGGATTTCACATTCCCTGTAAATTTTAAT 622
||||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 659 GTGCACTCGACTCTAGAGCCGTGTGGTGAGGTAGATTTCACATTCCCAGTGAATTTTAAT 718
Query 623 GAAGAAGAGCATATGGTGTATGTGCGGTGCCGTCCTCACCTCAAAGAGTTTATGGAGAGA 682
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 GAAGAAGAGCATATGGTGTATGTGCGATGCCGTCCTCACCTCAAAGAGTTTATGGAGAGA 778
Query 683 GTTTCCCGTCTTTTTGAGATCATTATATTTACAGCTAGCCAAAGCATTTATGCCGAGCAA 742
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 779 GTGTCCCGACTTTTTGAGATCATTATATTTACAGCTAGCCAAAGTATTTATGCTGAGCAA 838
Query 743 CTTCTGAACGTACTTGACCCTAAGAGAAAGCTCTTTCGCCATAGAGTGTACCGTGACTCC 802
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CTTCTGAACGTGCTTGACCCTAAGAGAAAGCTCTTTCGCCATAGAGTGTACCGTGACTCG 898
Query 803 TGTGTTTTCTTTGATGGTAACTACCTAAAGGATTTGTCAGTCCTTGGGCGTGATTTATCT 862
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 899 TGTGTTTTCTTTGATGGTAACTACCTCAAGGATTTGTCAGTCCTCGGGCGTGATTTATCT 958
Query 863 CGTGTTATCATTGTTGACAACTCCCCACAGGCATTTGGTTTCCAAGTGGAGAATGGGGTT 922
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 959 CGTGTTATCATTGTTGATAACTCCCCACAGGCATTTGGTTTCCAAGTGGAAAATGGAGTG 1018
Query 923 CCAATAGAGAGCTGGTTTAATGACCCGTCAGATAAAGAACTCCTTCACTTGCTCCCATTT 982
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1019 CCAATAGAGAGCTGGTTTAATGACCCATCAGATAAAGAACTCCTTCACTTGCTGCCATTT 1078
Query 983 CTTGAAAGCTTAATTGGAGTTGAAGATGTAAGGCCAATGATCGCCAAGAAATTCAATCTA 1042
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTTGAAAGCCTAATTGGAGTTGAAGATGTAAGGCCAATGATCGCCAAGAAATTCAATCTA 1138
Query 1043 AGGGAGAAGATCGATGCAGCTGTAGCTGCACCTGAATATCCTGTTGAGGCGGGAGATCCT 1102
||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1139 AGGGAGAAGATTGATGCAGCTGTAGCCGCACCTGAATATCCTGCTGAGGCGGGAGATCCT 1198
Query 1103 TTCGAAAGGTAAAGTCTATCGCCGAAAAAGTTATAAGCTTTTAAAGGAAGAATCTGGCAT 1162
||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1199 TTCGAAAGGTAAAGTCTATCGCC-AAAAC---A----CTTTTAAAGGAAGAATCTGGCAC 1250
Query 1163 AAGAGCTGAGAGA-G-AGatatatatataaatatatCAATGTTGTTTTCTTATTAGCTTA 1220
|||||| ||| | | ||| | |||||||| ||||||||||||||||||||||||| |||
Sbjct 1251 AAGAGCAGAG-GTTGGAGA-AGATATATAAGTATATCAATGTTGTTTTCTTATTAGTTTA 1308
Query 1221 AATTATGAACTTGGTATACAGAGAAAGACAGGATAGGCCTGTAAA--CAGTTTAATGCAC 1278
||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 1309 AATTAAGAACTTGGTATACAGAGAAAGACAGGATATGCCTGTAAAAACAGTTTAAGGCAC 1368
Query 1279 AATAACTGTATAATTGTCTCTCTTTTCTGGTTTATTTACTACTAC 1323
||||||||||||||||| | ||| | | ||||||||||| |||
Sbjct 1369 AATAACTGTATAATTGTTT-TCT---C-G-TTTATTTACTAGTAC 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65110106865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5