BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488029
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11890.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1596 0.0
> AT5G11890.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:3831664-3832944 FORWARD LENGTH=1281
Length=1281
Score = 1596 bits (864), Expect = 0.0
Identities = 1170/1304 (90%), Gaps = 75/1304 (6%)
Strand=Plus/Plus
Query 1 AAGATTCCACAAAAACTCTGTATTGtctctctctttctctcactatctctctctctttct 60
|||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |
Sbjct 1 AAGATTCCACAAAAACTCTGTATTGTCTCT-T-TCTCTCTCACTATCTCTCTCTCTTT-T 57
Query 61 -TGAGCTCAGATCTGACC----AG--AG-----A----AGAAGAAGAAGATGACTGACCG 104
||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 58 GTGAGCTCAGATCTGACCAGAGAGAAAGAAACAACCGGAGAAGAAGAAGATGACTGACCG 117
Query 105 AGTCTTCCCAGCTTCCAAACCACCAACCGCCACTAATGGAGCTCCACCAGGTGGTTCCAT 164
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 118 AGTCTTCCCAGCTTCCAAACCACCAACCGCCACTAATGGAGCTCCACCAGTTGGTTCCAT 177
Query 165 ACCACCTCCTCCGGCTTCGGCGGCAGTAACCAGCAACGGAACAGCCAATGGAATGGCAAA 224
|||||||||||| ||| ||||| | |||||||||||||||||| | || |||||||| ||
Sbjct 178 ACCACCTCCTCCAGCTCCGGCGACTGTAACCAGCAACGGAACAACAAACGGAATGGCTAA 237
Query 225 TCAGAAACCTCAAGTCTATATTCCGGCTAACCGTCCGATTTACCGTCCACAGCCTTACAG 284
|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||
Sbjct 238 TCAGAAACCTCAAGTCTACATTCCAGCTAACCGTCCGGTTTACCGTCCACAGCCTTACAG 297
Query 285 TCGCCGTCATCATCACCAATCTCGACCAAGCTGCCGACGAATTTGCTGCTGTTGCTGTTT 344
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 TCGCCGTCATCACCACCAATCTCGACCAAGCTGCCGACGAATTTGCTGTTGTTGCTGTTT 357
Query 345 CTGGTCGATTCTGATAATTCTGATCTTAGCTCTCATGACAGCAATCGCCGCCACCGCGAT 404
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 358 CTGGTCGATTCTGATAATTCTGATCTTAGCTCTCATGACTGCAATCGCCGCCACCGCGAT 417
Query 405 GTACGTGATCTACCACCCTCGTCCGCCGTCGTTCTCCGTCCCGTCGCTACGAATCAGCCG 464
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 418 GTACGTGATCTACCACCCTCGTCCGCCGTCGTTCTCCGTCCCGTCAATAAGAATCAGCCG 477
Query 465 CGTAAATCTAACGACCGCCTCTGATTCCTCCGTCTCTCATCTCTCTTCCTTCTTCAACTT 524
||| || ||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGTGAACCTAACAACCTCCTCTGATTCCTCCGTCTCTCATCTCTCTTCCTTCTTCAACTT 537
Query 525 CACTTTACTCTCAGAGAATCCAAATCAACACCTCTCTTTCTCTTACGATCCTTTCACCGT 584
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 CACTCTAATCTCAGAGAATCCAAACCAACACCTCTCTTTCTCTTACGATCCTTTCACCGT 597
Query 585 CACCGTTAAATCAGCCAAATCCGGTACGATGCTAGCTAACGGAACTGTTCCTGCTTTCTT 644
||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 598 CACCGTTAATTCAGCTAAATCCGGTACGATGCTCGGTAACGGAACTGTTCCTGCTTTCTT 657
Query 645 CAGCGATAACGGTAACAAGACTTCGTTTCACGGCGTGATCGCTACGTCAACAACGGCGCG 704
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 658 CAGCGATAACGGTAACAAAACTTCGTTTCACGGCGTGATCGCTACGTCTACAGCGGCGCG 717
Query 705 TGAGTTAGATCCGGATGAAGCTAAGCATTTGAAATCAGATCTGACGCGCGCGCGTGT-GG 763
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 718 TGAGTTAGATCCGGATGAAGCTAAGCATCTGAGATCAGATCTGACGCGCGCGCGTGTAGG 777
Query 764 TGT-TGGAGATCCAGATGAGAACTAAAGTGAAGATGATAATGGGGAAGCTGAAGAGTGAA 822
| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 -ATAT-GAGATCGAGATGAGAACTAAAGTGAAGATGATAATGGGGAAGCTGAAGAGTGAA 835
Query 823 GGAGTAGAGATCAAAGTGACATGTGAAGGATTTGAAGGAACTATACCAAAAGGTAAAACT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGAGTAGAGATCAAAGTGACATGTGAAGGATTTGAAGGAACTATACCAAAAGGTAAAACT 895
Query 883 CCAATTGTCGCAACTTCTAAAAAATCTAAGTGTAAGTCTGATCTAAGCGTTAAGGTCTGG 942
|||||||| || |||||||||||| ||||||||||||||||||| || || |||||||||
Sbjct 896 CCAATTGTAGCTACTTCTAAAAAAACTAAGTGTAAGTCTGATCTTAGTGTCAAGGTCTGG 955
Query 943 AAATGGAGTTTTTAGAGGGAATTT-GATATTTTCACAATTGAAAtttt-t-t-t---CT- 994
||||||||||| |||||||||||| |||| |||||||||||||||||| | | | ||
Sbjct 956 AAATGGAGTTTCTAGAGGGAATTTTGATAATTTCACAATTGAAATTTTCTATATAATCTT 1015
Query 995 ----------------GGATTTTGTGAAAATTTTGGAATGATCCaaaaaaaaaTTTCTTC 1038
||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 1016 CTTCTTTTTTTCTTCTGGATTTTGTGAAACTTTTGGAATGATCCAAAAGGAGATTTCTTC 1075
Query 1039 AGTTGTTAGTTAAAAATTTTCagagaagagtcagagagagagagaTAAGATATTGTCAAG 1098
|||||||||||||||| |||||||||||||||||||||| | || | ||||||||||
Sbjct 1076 AGTTGTTAGTTAAAAAATTTCAGAGAAGAGTCAGAGAGATA-AG----G-TATTGTCAAG 1129
Query 1099 TAGAAGAAGGCCACAGAATTCACAGCTTCTaaaaaaaaaTACTTGGAtttttgttttttt 1158
||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 1130 TAGAAGAAGGCCAGAGAATTCACGGCTTCTAAAAAAATTT-CTTGGATTTTTGTTTT--- 1185
Query 1159 ttttttGTTTGGAACTTTCTTTGTTTGAATTTATAT--A-T--A--CA-AA-TATAAATG 1209
||||||||||||||| || |||||||||| | | | || || ||||||||
Sbjct 1186 ------GTTTGGAACTTTCTTACTT-GAATTTATATTTAATGGATACAGAAATATAAATG 1238
Query 1210 TAATACTTATAAGGGAATGGGAGTACTAAAAAGCTGGAGATTGC 1253
|||||||| ||| | ||||| |||||||||||||||||||||||
Sbjct 1239 TAATACTTGTAACG-AATGG-AGTACTAAAAAGCTGGAGATTGC 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61596068715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5