BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488030
Length=986
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11900.1 | Symbols: | Translation initiation factor SUI1 fa... 1504 0.0
> AT5G11900.1 | Symbols: | Translation initiation factor SUI1
family protein | chr5:3833985-3836278 FORWARD LENGTH=1021
Length=1021
Score = 1504 bits (814), Expect = 0.0
Identities = 931/985 (95%), Gaps = 17/985 (2%)
Strand=Plus/Plus
Query 15 AAGCGACGAACAGAAGaaaaaaaaaaGGAAAAGGATTATTCCGCCGTAGAATCCCATATT 74
||||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||||
Sbjct 36 AAGCGACTAACAGAAG---AAAAAAACGAAAAGGATTATTCCGCCGTAGAAT-CCATATT 91
Query 75 ATCTCCCTCATCACTTTGCTACACAAGAATCTCA-TTTTCGCTTTTCCAAAGGAAACAA- 132
||||||||||||||||| || |||||| ||||| |||||||||||||||||| |||||
Sbjct 92 CTCTCCCTCATCACTTTGATAAACAAGAGTCTCATTTTTCGCTTTTCCAAAGGGAACAAC 151
Query 133 -------GA--ACTATCTATGGCGGAGAAGCTCGAGCCGGTGAAGGTTTTGTACTGCGGA 183
|| | |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 152 TTCTTCGGATTATTATCTATGGCAGAGAAGCTTGAGCCGGTGAAGGTTTTGTACTGCGGA 211
Query 184 GTTTGCTCTCTTCCAGCCGAATACTGCGAATTCGGTCCCGATTTCGCTAGATGTAAGCCC 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 GTTTGCTCTCTTCCAGCGGAATACTGCGAATTCGGTCCCGATTTCGCTAGATGTAAGCCC 271
Query 244 TGGCTCGTCGAAAACGCCCCGGATCTCTATCCTGATCTCCTCAAAGAAGCTAATGAGAAG 303
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 272 TGGCTCGTCGAAAACGCCCCAGATCTCTATCCTGATCTCCTCAAAGAAGCAAATGAGAAG 331
Query 304 GCAGCAGATAATGTTTCTGACAAACTCCAGTCGGTGGGAATATCTTCAGGTGGTGCTGAT 363
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 332 GCAGCAGATAATGTTTCTGACAAACTCCAGTCGGTGGGAATCTCTTCAGGTGGTGCTGAT 391
Query 364 GGGGCACCATCTTCAGCTCAGACTGGAGGGACATCCAAGAAGGAGGAAGTGAAGCGCCTA 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GGGGCACCATCTTCAGCTCAGACTGGAGGGACATCCAAGAAGGAGGAAGTGAAGCGCCTA 451
Query 424 CCTGGGGGAAAAGTTAAAAAGAAAGATCGACAGGAAGTTATTATTGAAAAGGTTGTACGC 483
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 452 CCTGGGGGGAAAGTTAAAAAGAAAGATCGACAGGAAGTTATCATTGAAAAGGTTGTACGC 511
Query 484 AACAAGCGCAAGTGTATCACCATTGTCAAAGGACTAGAACTGTTTGGGATAAAACTCAGT 543
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 512 AACAAACGCAAGTGTATCACCATTGTGAAAGGACTAGAACTGTTTGGGATAAAACTCAGT 571
Query 544 GATGCCTCTAAAAAGCTTGGGAAGAAGTTTGCCACTGGAGCATCAGTTGTCAAGGGACCA 603
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 572 GATGCCTCTAAAAAGCTTGGTAAGAAGTTTGCCACTGGAGCATCAGTTGTCAAGGGACCA 631
Query 604 ACTGAAAAGGAGCAAATTGATGTTCAAGGAGATATAATCTATGATATCGTTGAATTCATT 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 632 ACTGAAAAGGAGCAAATTGATGTTCAAGGGGATATAATCTATGATATCGTTGAATTCATT 691
Query 664 ACAGACACTTGGCCCGACGTACCTGAAAGATCCATTTTCTTCATAGAAGATGGGAAGAAG 723
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 692 ACAGACACTTGGCCCGACGTACCTGAAAGATCCATTTTCTTCATCGAAGATGGGAAGAAG 751
Query 724 GTTCAAGCTGGTTGATGATCACCTTTGTCCTCGGTTTT-GGCATGGCGGGTTCATGTAGA 782
||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 752 GTTCAGGCTGGTTGATGATCACCTTTGTCCTCGTTTTTTGGCATGGCGGGTTCATGTAGA 811
Query 783 TGAGCTAGTTCCTGAGTTATCCTATGTGTTTGGAGGAAATCACATCATGATTATAACTTT 842
||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 812 CGAGCTAGTTCCTGAGTTTTCCTATGTGTTTGGAGGAAATCGCATCTTGATTATAACTTT 871
Query 843 CAATATAACGTATAGTTGGATT-ATCATACTACTTTCTTATTCGGGTTGCGATAATTCCA 901
||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||
Sbjct 872 CAACGTAACGTATAGTTGGATTTATCATACTATTTTCTTATTCGGGTTGCGATAGTTCCA 931
Query 902 GACATGTTTCTCCAAACATTTCTCTTTTTGGGGGTCTTAATATTTAAAATGCGTCTTGAA 961
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 932 GACATGTTTCTCCAAACATTTCTCTTTTTGGGGGTCTTAATATTTAAAATGTGTCTTGAA 991
Query 962 ATGAATGTGTTCCTCGTTCTTGACC 986
||||| | |||| || | |||||||
Sbjct 992 ATGAACGCGTTCTTCATCCTTGACC 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48275015267
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5