BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488035
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11930.1 | Symbols: | Thioredoxin superfamily protein | chr... 821 0.0
AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr... 93.5 2e-18
> AT5G11930.1 | Symbols: | Thioredoxin superfamily protein | chr5:3844940-3845645
REVERSE LENGTH=706
Length=706
Score = 821 bits (444), Expect = 0.0
Identities = 603/672 (90%), Gaps = 42/672 (6%)
Strand=Plus/Plus
Query 1 ACTCTTTCTCTCTAATGAAGACGATGCGAGGTTTACGAGACTGCTCAAACGACGCCGTGA 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 21 ACTCTTTCTCTCTAATGAAGACGATGCGAGGTTTACGAAACTGCTCAAACGACGCCGTAA 80
Query 61 CACTAGACCTGACGG----------T--T-CT--T-C-C-TCCTCCTCCAGCACCACCAA 102
| ||||||||||||| | | || | | | |||||||||||||||| |||
Sbjct 81 CGCTAGACCTGACGGTTCATCCTCCTCCTCCTCCTCCTCTTCCTCCTCCAGCACCATCAA 140
Query 103 CAGTTTCCTCCTCCACCGCCTCGACGAGCCTTTCGTTCGATGAAGAGGAGACATCAGAGT 162
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 141 CAGTCTCCTCCTCCACCGCCTCGACGAGCCTGTCGTTCGATGAAGAGGAAACATCAGAGT 200
Query 163 CAAAGATTGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATCTTCCTCAT 222
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 CAAAGATCGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATTTTCCTCAT 260
Query 223 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTCGGAGTTCACCCAACAGTGA 282
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 261 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTTGGAGTTCACCCAACAGTGA 320
Query 283 TCGAGATCGACGACGGTGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCTGTGCTTTTCA 342
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 321 TCGAGATCGACGACGGAGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCGGTGCTTTTCA 380
Query 343 TCGGTGGTGCTTGTATCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 402
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCGGTGGTACTTGCGTCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 440
Query 403 TTATTCCTAGACTAGTTGAGGTTGGAGCCTTATTGGCATAATTGTAATTTTCTGTAtttt 462
||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 441 TTATTCCTAGACTCGTCGAGGTTGGAGCCTTATGGGCATAATTGTAATTTTCTGTATTTT 500
Query 463 t-tt-CTTTCTTTCCAAGT-TAGCCTATTTATAACCT-AA----T----A-A-TA---TC 505
| || ||||||||| |||| ||||||||||||||||| || | | | || ||
Sbjct 501 TCTTTCTTTCTTTC-AAGTCTAGCCTATTTATAACCTTAAGAAATTCTGATAATAAAATC 559
Query 506 CATTGTGAAAAATT-CCATTAATTCACTCTTTCTTA--GAAACATAAAAATGTTTCCttt 562
|||||| |||| || |||||||| ||||||||||| |||||| |||||||||| |||
Sbjct 560 CATTGT-AAAATTTTCCATTAATCCACTCTTTCTTTCTGAAACACAAAAATGTTT--TTT 616
Query 563 tttttttATCTTTTGCCAGTTGGTAAGTGTTGTTTAGATCATCACGTGTAAGATTTATTC 622
||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||| |||
Sbjct 617 TTTCTTTATCTTTTGCCAGTCGGTAAGTATTGTTTAGATCATCAAGTGTAAGATTTGTTC 676
Query 623 CATCATAATTAT 634
||||||||||||
Sbjct 677 CATCATAATTAT 688
> AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr4:15940561-15941330
REVERSE LENGTH=770
Length=770
Score = 93.5 bits (50), Expect = 2e-18
Identities = 96/117 (82%), Gaps = 7/117 (6%)
Strand=Plus/Plus
Query 132 CTTTCGTTCGATGAAGAGGAGA-CATCAG-AGTCAAAGATTGGACGGCTGATATCAGAGC 189
||||| |||| |||||||| | || | | || | ||||| ||||||||||||| ||||
Sbjct 205 CTTTCCATCGACGAAGAGGA-ATCAACGGAAG-CCAAGATCCGACGGCTGATATCGGAGC 262
Query 190 ATCCAGTCATCATATTCACTCGATCTTCCTCATGTTGCATGTGCCACGTCATGAAGA 246
|||| || ||||| |||| | |||| | ||||||||||||||||||||||||||||
Sbjct 263 ATCCTGTGATCATCTTCAGTAGATC-T--TCATGTTGCATGTGCCACGTCATGAAGA 316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5