BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488035 Length=634 Score E Sequences producing significant alignments: (Bits) Value AT5G11930.1 | Symbols: | Thioredoxin superfamily protein | chr... 821 0.0 AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr... 93.5 2e-18 > AT5G11930.1 | Symbols: | Thioredoxin superfamily protein | chr5:3844940-3845645 REVERSE LENGTH=706 Length=706 Score = 821 bits (444), Expect = 0.0 Identities = 603/672 (90%), Gaps = 42/672 (6%) Strand=Plus/Plus Query 1 ACTCTTTCTCTCTAATGAAGACGATGCGAGGTTTACGAGACTGCTCAAACGACGCCGTGA 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 21 ACTCTTTCTCTCTAATGAAGACGATGCGAGGTTTACGAAACTGCTCAAACGACGCCGTAA 80 Query 61 CACTAGACCTGACGG----------T--T-CT--T-C-C-TCCTCCTCCAGCACCACCAA 102 | ||||||||||||| | | || | | | |||||||||||||||| ||| Sbjct 81 CGCTAGACCTGACGGTTCATCCTCCTCCTCCTCCTCCTCTTCCTCCTCCAGCACCATCAA 140 Query 103 CAGTTTCCTCCTCCACCGCCTCGACGAGCCTTTCGTTCGATGAAGAGGAGACATCAGAGT 162 |||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| Sbjct 141 CAGTCTCCTCCTCCACCGCCTCGACGAGCCTGTCGTTCGATGAAGAGGAAACATCAGAGT 200 Query 163 CAAAGATTGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATCTTCCTCAT 222 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 201 CAAAGATCGGACGGCTGATATCAGAGCATCCAGTCATCATATTCACTCGATTTTCCTCAT 260 Query 223 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTCGGAGTTCACCCAACAGTGA 282 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 261 GTTGCATGTGCCACGTCATGAAGAAGCTTCTATCGACCGTTGGAGTTCACCCAACAGTGA 320 Query 283 TCGAGATCGACGACGGTGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCTGTGCTTTTCA 342 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 321 TCGAGATCGACGACGGAGAAATTGCTTACCTCGCCGTTGAAGCCGCTCCGGTGCTTTTCA 380 Query 343 TCGGTGGTGCTTGTATCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 402 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 TCGGTGGTACTTGCGTCGGTGGCTTCGAGTCACTTGTAGCACTTCACCTAAGTGGTCAGC 440 Query 403 TTATTCCTAGACTAGTTGAGGTTGGAGCCTTATTGGCATAATTGTAATTTTCTGTAtttt 462 ||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| Sbjct 441 TTATTCCTAGACTCGTCGAGGTTGGAGCCTTATGGGCATAATTGTAATTTTCTGTATTTT 500 Query 463 t-tt-CTTTCTTTCCAAGT-TAGCCTATTTATAACCT-AA----T----A-A-TA---TC 505 | || ||||||||| |||| ||||||||||||||||| || | | | || || Sbjct 501 TCTTTCTTTCTTTC-AAGTCTAGCCTATTTATAACCTTAAGAAATTCTGATAATAAAATC 559 Query 506 CATTGTGAAAAATT-CCATTAATTCACTCTTTCTTA--GAAACATAAAAATGTTTCCttt 562 |||||| |||| || |||||||| ||||||||||| |||||| |||||||||| ||| Sbjct 560 CATTGT-AAAATTTTCCATTAATCCACTCTTTCTTTCTGAAACACAAAAATGTTT--TTT 616 Query 563 tttttttATCTTTTGCCAGTTGGTAAGTGTTGTTTAGATCATCACGTGTAAGATTTATTC 622 ||| |||||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||| Sbjct 617 TTTCTTTATCTTTTGCCAGTCGGTAAGTATTGTTTAGATCATCAAGTGTAAGATTTGTTC 676 Query 623 CATCATAATTAT 634 |||||||||||| Sbjct 677 CATCATAATTAT 688 > AT4G33040.1 | Symbols: | Thioredoxin superfamily protein | chr4:15940561-15941330 REVERSE LENGTH=770 Length=770 Score = 93.5 bits (50), Expect = 2e-18 Identities = 96/117 (82%), Gaps = 7/117 (6%) Strand=Plus/Plus Query 132 CTTTCGTTCGATGAAGAGGAGA-CATCAG-AGTCAAAGATTGGACGGCTGATATCAGAGC 189 ||||| |||| |||||||| | || | | || | ||||| ||||||||||||| |||| Sbjct 205 CTTTCCATCGACGAAGAGGA-ATCAACGGAAG-CCAAGATCCGACGGCTGATATCGGAGC 262 Query 190 ATCCAGTCATCATATTCACTCGATCTTCCTCATGTTGCATGTGCCACGTCATGAAGA 246 |||| || ||||| |||| | |||| | |||||||||||||||||||||||||||| Sbjct 263 ATCCTGTGATCATCTTCAGTAGATC-T--TCATGTTGCATGTGCCACGTCATGAAGA 316 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30592595523 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5