BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488037
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11950.1 | Symbols: | Putative lysine decarboxylase family ... 1345 0.0
AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxy... 390 1e-107
> AT5G11950.1 | Symbols: | Putative lysine decarboxylase family
protein | chr5:3854968-3856983 FORWARD LENGTH=923
Length=923
Score = 1345 bits (728), Expect = 0.0
Identities = 827/872 (95%), Gaps = 18/872 (2%)
Strand=Plus/Plus
Query 1 TTCttttttttttttGTTTGACGGCTTGAGGGAATACGTTGATTTTGTAGATTTTTATCC 60
|||| |||||||||||||||||| | ||||||||||| |||| |||||||||||||||||
Sbjct 42 TTCTCTTTTTTTTTTGTTTGACGACCTGAGGGAATACCTTGA-TTTGTAGATTTTTATCC 100
Query 61 ACTAATGGAAGATAATAACCAGCGACGCAGATTCAGAAAAATTTGTGTGTTTTGCGGAAG 120
| |||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||
Sbjct 101 ATTAATGGAAGATAAT---CAGCGAAGCAGATTCAGAAAAATCTGTGTCTTTTGCGGAAG 157
Query 121 CCACTCTGGTCACCGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CCACTCTGGTCACAGAGAAGTTTTCAGTGATGCTGCCATCGAACTCGGCAATGAACTCGT 217
Query 181 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 GAAGAGGAAGATAGATTTGGTTTATGGAGGAGGAAGTGTTGGATTGATGGGTTTGATATC 277
Query 241 CAGGAGAGTCTATGAAGGTGGTTTCCATGTACTCGGGATCATTCCCAAAGCTTTGATGCC 300
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 278 CAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGAATCATTCCCAAAGCTTTGATGCC 337
Query 301 AACTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 AATTGAGATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG 397
Query 361 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AAAGGCTGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCTGGAGGTTATGGAAC 457
Query 421 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 AATGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGT 517
Query 481 TGGTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCGGTGT 540
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 518 TGGTCTATTGAATGTTGATGGGTACTATAACAATTTGCTTGCTTTATTTGATACCGGTGT 577
Query 541 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CGAAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAA 637
Query 601 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACAAGCAGGTTGCATCGCACGA 660
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 638 AGAGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACATGCATGTTGCATCGCACGA 697
Query 661 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACTACAAAACAAGCCGCAATAAAA 720
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 698 AAGCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACAAGAAAACAAGCCGCAATAAAA 757
Query 721 ----TTA-----G-----CATAAGCTACTTCCATTTCAAGTTTAGCCTCTAAATTAATTG 766
||| | ||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 758 GCAATTATTATTGTTTAGCATAAGCTATTTCCATTTCAAGTTTAGTCTCTAAATTATTTG 817
Query 767 CTGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 826
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CAGAATCCACAATGTGTATAAGAAAACTCAAATCTTGTTGCAATATGAAACAGCACATTG 877
Query 827 GGTTCCCAAAATGAAAGTGTTGCTGATTATGT 858
||| ||||| |||||| |||||||||||||||
Sbjct 878 GGTCCCCAACATGAAAATGTTGCTGATTATGT 909
> AT5G26140.1 | Symbols: LOG9, ATLOG9 | Putative lysine decarboxylase
family protein | chr5:9130796-9131636 FORWARD LENGTH=432
Length=432
Score = 390 bits (211), Expect = 1e-107
Identities = 350/417 (84%), Gaps = 10/417 (2%)
Strand=Plus/Plus
Query 308 ATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG-AAAGGC 366
||||||||||||||||| ||||| |||||| ||||| |||||||||| ||||| ||| ||
Sbjct 16 ATATCTGGTGAGACTGTTGGAGAGGTAAGAATTGTTTCAGACATGCACGAGCGCAAA-GC 74
Query 367 TGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCT--G-GAG-GTTATGGAACAA 422
| ||||||| || ||||||| ||| |||||||| || ||| | ||| | |||| ||| |
Sbjct 75 TACAATGGCTCAAGAAGCTGGGGCTTTCATTGCGCT-CCTAGGCGAGAGGTATGAAACTA 133
Query 423 TGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGTTG 482
||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 134 TGGAGGAACTACTGGAGATGATAACATGGGCACAGCTTGGTATCCATAAGAAGACGGTTG 193
Query 483 GTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCGGTGTCG 542
|||| ||||||||||||| ||||||||||||||||||||||| |||||||| || || |
Sbjct 194 GTCTTTTGAATGTTGATGGTTACTATAACAATTTGCTTGCTTTCTTTGACACTGGAGTTG 253
Query 543 AAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAAAG 602
||||||||||||| || | |||||| |||| || || ||||| || ||| | || | ||
Sbjct 254 AAGAAGGTTTTATTAAACAAGGTGCTTGTAATATCGTTGTTTCCGCGCCATCGGCTAGAG 313
Query 603 AGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACAAGCAGGTTGCATCGCACGAAA 662
| |||||||||||||||||| ||||||||||||||||||| | |||| || ||| |||
Sbjct 314 AACTTATGGAGAAGATGGAGCTATATACTCCTTCACACAAGTACATTGCTTCTCACCAAA 373
Query 663 GCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACTACA--A-AACAAGCCGCAAT 716
|||||||||||||| ||| ||||||||||| |||| | | |||||||| ||||
Sbjct 374 GCTGGAAAGTTGAACCACTTGGAGATTACCCACTACTAAATGAGAACAAGCCTCAAT 430
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5