BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488039

Length=625
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G11970.1 | Symbols:  | Protein of unknown function (DUF3511)...   717    0.0  


> AT5G11970.1 | Symbols:  | Protein of unknown function (DUF3511) 
| chr5:3863071-3863755 REVERSE LENGTH=685
Length=685

 Score =  717 bits (388),  Expect = 0.0
 Identities = 455/485 (94%), Gaps = 14/485 (3%)
 Strand=Plus/Plus

Query  1    ATATAGCGTGGAGCAACAAATTGAGACCAGCTCAAAAGACACGTCCTTTTTTGCGTTACT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATATAACGTGGAGCAACAAATTGAGACCAGCTCAAAAGACACGTCCTTTTTTGCGTTACT  60

Query  61   ATTATTCTCCTCTTTTCTCTCCAATTATTCTCTGAGCTGTAATAAC----a-aaaaaaaa  115
            |||||||||||| |||||||||||||||||||||||||||||||||    | ||||||||
Sbjct  61   ATTATTCTCCTCCTTTCTCTCCAATTATTCTCTGAGCTGTAATAACATAAACAAAAAAAA  120

Query  116  GATTCTCTCGATCAAACTTGCCGGAACCCATGGAAGACTTCGGCCGTCAACGACCATACG  175
            ||||||||||||||||||||||||   |||||||||| ||||||||||||||||||||||
Sbjct  121  GATTCTCTCGATCAAACTTGCCGGCGTCCATGGAAGATTTCGGCCGTCAACGACCATACG  180

Query  176  GAGACGGAGGGATGCAGATCCAGCCTTACCACGGCGGCGCTTCGGGAA-CCGGCGATTTC  234
            |||||||||||||||||||||||||||||||   |||    ||   ||  ||| ||||||
Sbjct  181  GAGACGGAGGGATGCAGATCCAGCCTTACCA---CGG-TAATC---AAGGCGGTGATTTC  233

Query  235  AGGAGCTATAGCGCATCGTACGGGACGAGGGACAACAATATATACGATGTGAAAAAGGAG  294
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  234  AGGAGCTATAGCGCATCGTACGGGACGAGGGAGAACAATATATACGATGTGAAAAAGGAG  293

Query  295  AAATCGATAGCAAGATCCAAGTCGTGGGGGATAACGGACCCGGAGCTCCAGAGGAAGAAA  354
            ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct  294  AAATCGATAGCAAGATCCAAGTCTTGGGGAATAACGGATCCGGAGCTCCAGAGGAAGAAA  353

Query  355  CGGGTCGCGAGTTATAAGATGTATGGTGTTGAAGGCAAAGTCAAAGGCTCTTTTAGAAAC  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  354  CGGGTCGCGAGTTATAAGATGTATGGTGTTGAAGGCAAAGTCAAAGGCTCTTTTAGAAAC  413

Query  415  AGTTTCCGATGGCTTAAGCAGAGGTACACACAGGTCGTCTATGGTTGGTGGTGATTCAtt  474
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  414  AGTTTCAGATGGCTTAAGCAGAGGTACACACAGGTCGTCTATGGTTGGTGGTGATTC-TT  472

Query  475  ttttc  479
            |||||
Sbjct  473  TTTTC  477



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30140488200


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5