BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488040
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G11980.1 | Symbols: | conserved oligomeric Golgi complex co... 3027 0.0
> AT5G11980.1 | Symbols: | conserved oligomeric Golgi complex
component-related / COG complex component-related | chr5:3868652-3872269
REVERSE LENGTH=1990
Length=1990
Score = 3027 bits (1639), Expect = 0.0
Identities = 1777/1842 (96%), Gaps = 16/1842 (1%)
Strand=Plus/Plus
Query 1 GAAAACAAATCACAGAAACAACATTTGATGTTAA-TTATTTGaaaaaaaTCGTGAGTTTC 59
||||||||||||||||||| | ||||||||||| || |||| ||||||||| |||||||
Sbjct 5 GAAAACAAATCACAGAAAC-A-TTTTGATGTTAAGTT-TTTG-AAAAAATCGCGAGTTTC 60
Query 60 TGGATCTGTTGTTGTATACTTCCTTTGAGGAGATTTTGATAGCATCGGCTGCAAGAGTAA 119
|||||| ||||||||| ||| ||||||||||||||||||||| | || ||||||
Sbjct 61 TGGATC------TGTATACTTTCTTAGAGGAGATTTTGATAGCATCGTTTACAGGAGTAA 114
Query 120 GATCTGGAAATGGCAACGGAGGTTGGGGAGATGTCTCCGCCGGAGGCGACGGCGAGTCTT 179
|||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 115 GATCCGGGAATGGCAATGGAGGTTGGGGAGATGTCTCAGCCGGAGGCGACGGCGAGTCTT 174
Query 180 CTCTCTCTCGCTTCCGCCACTCAGCAACCGTACGTCTCCGAGCTCCTCTCTTTCACTCTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CTCTCTCTCGCTTCCGCCACTCAGCAACCGTACGTCTCCGAGCTCCTCTCTTTCACTCTT 234
Query 240 GATCGTCTCCACAAGGAACCGGAGCTGCTTCGAGTGGATGCGGAGAGGATTCAGAGGCAA 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 235 GATCGTCTCCACAAGGAACCGGAGCTGCTTCGAGTGGATGCGGAGCGGATTCAGAGGCAA 294
Query 300 ATGCAAGAGGTGGCTGTTGGAAATTACCGCGCGTTTATCACCGCTGCTGATGCTTTGCTT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 ATGCAAGAGGTGGCTGTTGGAAATTACCGCGCGTTTATCACCGCTGCTGATGCTTTGCTT 354
Query 360 GCGATCCGTCAGGAAGTTTCTTCCATTGATAAGCATCTCGAGTCTCTGATTGGCGAAGTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GCGATCCGTCAGGAAGTTTCTTCCATTGATAAGCATCTCGAGTCTCTGATTGGCGAAGTC 414
Query 420 CCAAAATTAACGTCCGGTTGCACAGAATTTATCGATTCTGCTGAGAATATTCTGGAGAAG 479
|||||| ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 415 CCAAAACTAACGTCTGGTTGCACTGAATTTATCGATTCTGCTGAGAATATTTTGGAGAAG 474
Query 480 AGGAAGATGAACCAAGCTTTGCTGGCAAATCACAGCACTCTTCTTGACTTGCTTGAGATT 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGGAAGATGAACCAAGCATTGCTGGCAAATCACAGCACTCTTCTTGACTTGCTTGAGATT 534
Query 540 CCTCAGCTTATGGACACATGCGTGAGGAATGGAAATTTTGATGAGGCTCTTGACCTGGAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CCTCAGCTTATGGACACATGCGTGAGGAATGGAAATTTTGATGAGGCTCTTGACCTGGAA 594
Query 600 GCATTTGTATCGAAACTTGCTACCATGCATCCCAAATTGCCAGTTATCCAAGCACTTGCA 659
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 595 GCATTTGTATCGAAACTTGCTACCCTGCATCCCAAATTGCCAGTTATCCAAGCACTTGCA 654
Query 660 GCGGAGGTTAGACAAACAACTCAGTCACTTCTCTCACAGCTTCTCCAGAAACTACGCTCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GCGGAGGTTAGACAAACAACTCAGTCACTTCTCTCACAGCTTCTCCAGAAACTACGCTCA 714
Query 720 AATATACAGTTGCCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTT 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AATATACAGTTACCAGAATGTCTCCGCATTATTGGATACTTACGCCGAATAGGTGTCTTT 774
Query 780 GGCGAGTATGAAATGCGATTACAGTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGCGAGTATGAAATGCGATTACAGTTCTTAAGATGCCGAGAGGCATGGCTCACTGGAATT 834
Query 840 CTTGAGGATCTAGACCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCAC 899
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTTGAGGATTTAGATCAGAAAAATGCCTATGAGTATTTAAAAGGCATGATAAACTGTCAC 894
Query 900 AGAATGCACCTATTTGACGTGGTTAACCAATATCGAGCTATATTCGCTGATGACACATCG 959
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 895 AGAATGCACCTATTTGACGTGGTTAACCAATATCGAGCTATATTTTCTGATGATACATCT 954
Query 960 GGGAGCGAAGAAAATTATGATGGTGGACTTCTGTTTAGCTGGGCCATGCATCAAATAACA 1019
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 GGGAGCGAAGAAAATTATGATGGTGGACTTTTGTTTAGCTGGGCCATGCATCAAATAACA 1014
Query 1020 TCACACCTGAAGACTCTGAAAATCATGCTTCCAAAGATTACTGAAGGAGGATCTCTATCA 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCACACCTGAAGACTCTAAAAATCATGCTTCCAAAGATTACTGAAGGAGGATCTCTATCA 1074
Query 1080 AATATTTTGGATCAGTGCATGTACTGTGCGATGGGGCTTGGTTGGGTTGGGCTAGACTTC 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1075 AATATTTTGGATCAGTGCATGTACTGTGCGATGGGGCTTGGTGGGGTTGGGCTAGACTTC 1134
Query 1140 CGGGGTTTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTAAACTTATTCTCCAAGAACATG 1199
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CGGGGTCTGCTTCCTCCACTTTTTGAAGAGGCGGTTCTAAACTTATTCTCCAAGAACATG 1194
Query 1200 AGTACAGCGGTTGAGAATTTCCAGTTAGTTTTGGATTCACATCGATGGGTTCCATTACCA 1259
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 AGTACAGCAGTTGAGAATTTTCAGTTAGTTTTGGATTCACATCGATGGGTTCCATTACCA 1254
Query 1260 TCTGTTGGCTTCCCTTCAAGTGGGATTAATGAAGATAGCAAGGATGATGTCACACCTCCA 1319
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1255 TCTGTTGGCTTTCCTTCAAGTGGTATTAATGAAGATAGCAAGGATGACGTCACACCTCCA 1314
Query 1320 TCATACTTGATGGAGCACCCGCCACTTGCAGTTTTCATAAACGGTGTATCTGCTGCTTTG 1379
||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 1315 TCATACTTGATGGAGCACCCGCCACTTGCAGTTTTCATAAATGGGGTATCTTCTGCTTTG 1374
Query 1380 AACGAATTACGTCCTTGTGCCCCACTAAGTCTAAAGAATGTTGTTGCTCATGAACTGATC 1439
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1375 AACGAATTACGTCCTTGTGCCCCGCTAAGTCTAAAGAATGTTGTTGCTCATGAACTGATC 1434
Query 1440 AAAGGACTCCAGGCCGTGTCTGACTCCTTACTAAGATACAATACAACTCGGATGCTTCGA 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AAAGGACTCCAGGCCGTGTCTGACTCCTTACTAAGATACAATACAACTCGGATGCTTCGA 1494
Query 1500 CTCAGTGAATCCAATCTCTTCCTCTCACTTTGCCGAGCTTTTGTCGAGGTGGTTTTTCCA 1559
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1495 CTCAGTGAATCCAATCTATTCCTTTCACTTTGCCGAGCTTTTGTCGAGGTGGTTTTTCCA 1554
Query 1560 CATTGCGCCACATGCTTTGGCCGATGTTATCCAGGTGGTGCCACAATCGTTATGGATGCC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CATTGCGCCACATGCTTTGGCCGATGTTATCCAGGTGGTGCCACAATCGTTATGGATGCC 1614
Query 1620 AAGAGCGCATACGAAGGTCTGGGTCGCATCTTAGCTGCATCGTCCTCTCAAGAACCATCC 1679
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1615 AAGAGTGCATACGAAGGTCTGGGTCGCATCTTAGCTGCATCGTCCTCTCAAGAACCATCC 1674
Query 1680 AACAAATCTCCGAAAG-TCATCAGCACCGACACAAAGGATGCATCAGAGAATGGTGTAGC 1738
||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1675 AACAAATCTCC-AAAGGTCATCAGCACGGACACAAAGGATGCATCAGAGAATGGTGTAGC 1733
Query 1739 CTCCCAACCTGAAGAAAAACAAGCCGAGATTCCGAACGAGAAAGAAGA---TAACAGTCC 1795
||||||||||||||||||||||||||||| ||| |||| ||||||||| |||||||||
Sbjct 1734 CTCCCAACCTGAAGAAAAACAAGCCGAGAATCCAAACGCGAAAGAAGAAGATAACAGTCC 1793
Query 1796 CATTCCCTTGCAGACTCCTGAGACAACACCTGAGTCTTGAGA 1837
|||||| |||||||||||||||| |||||| |||||||||||
Sbjct 1794 CATTCCTTTGCAGACTCCTGAGATAACACCCGAGTCTTGAGA 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90913186995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5