BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488044
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock... 745 0.0
AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat sh... 556 6e-158
> AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock
protein | chr5:3882237-3882938 REVERSE LENGTH=702
Length=702
Score = 745 bits (403), Expect = 0.0
Identities = 457/483 (95%), Gaps = 3/483 (1%)
Strand=Plus/Plus
Query 27 CTAACAATGGATTTGGGAAGGTTTCCAATAATCTCAATTCTCGAAGACATGCTCGAAGTC 86
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 57 CTAACAATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTC 116
Query 87 CCTGAAGA-C-C-ACAATGAGAAGACCCGAAACAACCCTTCAAGAGTTTACATGCGAGAC 143
|| ||||| | | |||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 117 CCCGAAGACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGAC 176
Query 144 GCAAAGGCAATGGCTGCTACACCAGCTGACGTCATCGAGCACCCGAACGCATACGCTTTC 203
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 177 GCTAAGGCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTC 236
Query 204 GTTGTGGACATGCCTGGAATCAAAGGAGATGAGATCAAGGTTCAGGTCGAGAACGACAAT 263
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GTCGTGGACATGCCTGGAATCAAAGGAGATGAGATCAAGGTTCAGGTCGAGAACGACAAT 296
Query 264 GTGCTTGTGGTGAGTGgagagaggcagagagagaacaaagagaacgaaggcgtgaagtat 323
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 297 GTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTAT 356
Query 324 gtgaggatggagagaagaaTGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCT 383
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 GTGAGGATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCA 416
Query 384 GATTTGGACAAGATCTCTGCTGTTTGTCATGATGGTGTTTTGAAGGTTACTGTTCAGAAA 443
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 417 GATTTGGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAA 476
Query 444 CTTCCTCCTCCTGAGCCAAAGAAGCCAAAGACTATTCAAGTTCAAGTTGCTTGAGTTTGt 503
||||||||||| || |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 477 CTTCCTCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAGTTGCTTGAGTTTGT 536
Query 504 ttt 506
|||
Sbjct 537 TTT 539
> AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat
shock protein 17.6A | chr5:3884107-3884737 REVERSE LENGTH=631
Length=631
Score = 556 bits (301), Expect = 6e-158
Identities = 443/511 (87%), Gaps = 12/511 (2%)
Strand=Plus/Plus
Query 34 TGGA-TTTGGGAAGGTTTCCAATAATCTCAATTCTCGAAGACATGCTCGAAGTCCCTGAA 92
|||| ||| ||||||||||||||| | ||||| |||||||||||||| |||| |||||||
Sbjct 61 TGGAGTTT-GGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAA 119
Query 93 GACCACAA-TGAGAAGACCCGAAACAACCCTTCAAGAGTTTACATGCGAGACGCAAAGGC 151
|| || || |||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 120 GAACA-AACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGC 178
Query 152 AATGGCTGCTACACCAGCTGACGTCATCGAGCACCCGAACGCATACGCTTTCGTTGTGGA 211
|||||||||||||||||||||||| |||||||||||| | || |||| ||||| |||||
Sbjct 179 AATGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGA 238
Query 212 CATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCTTG 270
||||||||||||||||||||||||||| || ||| ||| | |||||||| || |||||||
Sbjct 239 CATGCCTGGAATCAAAGGAGATGAGATTCA-GGTCCAGATAGAGAACGAGAACGTGCTTG 297
Query 271 TGGTGAGTGg-agagaggcagagagagaacaaagagaacgaaggcgtgaagtatgtgagg 329
|||||||||| | | || ||||| || ||||| ||||| ||||| ||||||| |||||||
Sbjct 298 TGGTGAGTGGCAAA-AGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGG 356
Query 330 atggagagaagaaTGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAGAATGCTGATTTG 389
|||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| ||||||
Sbjct 357 ATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTG 416
Query 390 GACAAGATCTCTGCTGTTTGTCATGATGGTGTTTTGAAGGTTACTGTTCAGAAACTTCCT 449
|| ||||||||||| | |||| |||| ||||| ||||| || ||| ||| ||||||||||
Sbjct 417 GAGAAGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCT 476
Query 450 CCTCCTGAGCCAAAGAAGCCAAAGACTATTCAAGTTCAAGTTGCTTGAGTTTGtttttt- 508
||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |
Sbjct 477 CCTCCTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGA 536
Query 509 t--tATTTCTGGGTTTGA-TGAATGTAATCG 536
| | ||| || |||| | ||||||||||||
Sbjct 537 TCGTGTTTTTGTGTTTTAATGAATGTAATCG 567
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5