BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488045
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat sh... 719 0.0
AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock... 614 3e-175
> AT5G12030.1 | Symbols: AT-HSP17.6A, HSP17.6, HSP17.6A | heat
shock protein 17.6A | chr5:3884107-3884737 REVERSE LENGTH=631
Length=631
Score = 719 bits (389), Expect = 0.0
Identities = 451/482 (94%), Gaps = 0/482 (0%)
Strand=Plus/Plus
Query 2 TGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAAG 61
|||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||||
Sbjct 61 TGGAGTTTGGAAGGTTTCCAATATTTTCAATCCTCGAAGACATGCTTGAAGCCCCTGAAG 120
Query 62 AACAAACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AACAAACCGAGAAGACTCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAGGCAA 180
Query 122 TGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTGGACA 181
||||||||||||||||||||||||||||||| || || ||||| ||||||| ||||||||
Sbjct 181 TGGCTGCTACACCAGCTGACGTTATCGAGCACCCGGATGCGTACGTTTTCGCCGTGGACA 240
Query 182 TGCCTGGAATCAAAGGAGATGAGATTCAGGTTCAGATCGAGAGCGAGAACGTTCTTGTGG 241
||||||||||||||||||||||||||||||| ||||| |||| ||||||||| |||||||
Sbjct 241 TGCCTGGAATCAAAGGAGATGAGATTCAGGTCCAGATAGAGAACGAGAACGTGCTTGTGG 300
Query 242 TGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAGGATGG 301
||||||| ||||||||||| || | ||| ||||| |||||||||||||||||||||||||
Sbjct 301 TGAGTGGCAAAAGACAGAGGGACAACAAGGAGAATGAAGGTGTGAAGTTTGTGAGGATGG 360
Query 302 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTTGGACA 361
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 361 AGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGATAATGCAGATTTGGAGA 420
Query 362 AGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCCTCCTC 421
|||||||||| ||||| ||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 421 AGATCTCTGCGGCTTGTAATGACGGTGTGTTGAAAGTGACTATTCCGAAACTTCCTCCTC 480
Query 422 CTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTTGTGATCGT 481
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 CTGAGCCAAAGAAACCAAAGACTATACAAGTTCAAGTCGCTTGAGTTTGTTTGTGATCGT 540
Query 482 GT 483
||
Sbjct 541 GT 542
> AT5G12020.1 | Symbols: HSP17.6II | 17.6 kDa class II heat shock
protein | chr5:3882237-3882938 REVERSE LENGTH=702
Length=702
Score = 614 bits (332), Expect = 3e-175
Identities = 437/488 (90%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 1 ATGGATTTTGGAAGGTTTCCAATATTCTCAATCCTCGAAGACATGCTCGAAGTCCCTGAA 60
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 63 ATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTCCCCGAA 122
Query 61 GA--ACAA-ACCGAGAAGACCCGTAACAACCCTTCAAGAGCTTACATGCGAGACGCAAAG 117
|| |||| | |||||||||||| |||||||||||| ||| ||||||||||||||| |||
Sbjct 123 GACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGACGCTAAG 182
Query 118 GCAATGGCTGCTACACCAGCTGACGTTATCGAGCATCCTGACGCGTATGTTTTCGTCGTG 177
||||||||||||||||| |||||||| |||||||| ||| |||| |||| |||||||||
Sbjct 183 GCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTCGTCGTG 242
Query 178 GACATGCCTGGAATCAAAGGAGATGAGATTCA-GGTTCAGATCGAGAGCGAGAACGTTCT 236
||||||||||||||||||||||||||||| || ||||||| |||||| ||| || || ||
Sbjct 243 GACATGCCTGGAATCAAAGGAGATGAGAT-CAAGGTTCAGGTCGAGAACGACAATGTGCT 301
Query 237 TGTGGTGAGTGGAAAAAGACAGAGAGAGAGCAAAGAGAACGAAGGTGTGAAGTTTGTGAG 296
||||||||||||| | || |||||||||| |||||| |||||||||||||||| ||||||
Sbjct 302 TGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTATGTGAG 361
Query 297 GATGGAGAGGAGGATGGGGAAGTTTATGAGGAAGTTTCAGTTACCTGAGAATGCTGATTT 356
||||||||| || ||||| ||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 362 GATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCAGATTT 421
Query 357 GGACAAGATCTCTGCTACTTGTCATGACGGTGTGTTGAAAGTGATTGTTCAGAAACTTCC 416
|||||||||||||||| ||||||||||||||||||||| || | |||||||||||||||
Sbjct 422 GGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAACTTCC 481
Query 417 TCCTCCTGAGCCTAAGAAACCAAAGACTATACAAGTTCAAGTTGCTTGAGTTTGTTT-GT 475
|||||| || || |||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 482 TCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAGTTGCTTGAGTTTGTTTTGT 541
Query 476 GATCGTGT 483
||| ||||
Sbjct 542 GATTGTGT 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5