BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488046
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12040.1 | Symbols: | Nitrilase/cyanide hydratase and apoli... 2102 0.0
> AT5G12040.1 | Symbols: | Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein | chr5:3885068-3888077
FORWARD LENGTH=1509
Length=1509
Score = 2102 bits (1138), Expect = 0.0
Identities = 1384/1495 (93%), Gaps = 48/1495 (3%)
Strand=Plus/Plus
Query 1 AAACGCAGACGCAGAGGCTTCATGACTCATGGCTTTTGTGAAGGTGAAGTATCATTATCA 60
||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||| |||||
Sbjct 1 AAACGCAAACGCAGAGGATTCATGAGTCATGGCTTTTGTG-AGGTGAAGTATCAATATCA 59
Query 61 TCTACCTA---A-CTGATCATCGGACTAAAGTGAAATGAAGTCAGCAATTTCATCGTCAC 116
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTACCTACCTATATGATCATCGGACTAAAGTGAAATGAAGTCAGCAATTTCATCGTCAC 119
Query 117 TCTTGTTCAATTCCAAGAATCTTTTAAACCCTAATCCTCTCTCTCGCTTCATCTCTCTCA 176
|||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 120 TCTTCTTCAATTCGAAGAATCTTTTAAACCCTAATCCTCTTTCTCGCTTCATTTCTCTCA 179
Query 177 AATCTAACTTCCTCCCTAAACTATCTCCGAGATCGATCA-T--T---A-----AATCT-C 224
|||||||||||||||||||| |||||||||||||||||| | | | || || |
Sbjct 180 AATCTAACTTCCTCCCTAAATTATCTCCGAGATCGATCACTAGTCACACCTTGAAGCTCC 239
Query 225 CATCTTCGTCAACCTCAGCTTTAAGATCCATCTCCTCCTCCATGGCTTCTTCTTTCAAAC 284
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 240 CATCTTCGTCAACCTCAGCTTTAAGATCCATTTCCTCTTCCATGGCTTCTTCTTTC-AAC 298
Query 285 CC-GAACAAGCTAGAGTTCCATCTGCTCTTCCCCTCCCAGCTCCTCCGTTGACTAAATTC 343
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 299 CCTGAACAAGCTAGAGTTCCCTCTGCTCTTCCTCTCCCAGCTCCTCCGTTGACCAAATTC 358
Query 344 AACATCGGATTGTGTCAGCTATCTGTGACGTCTGACAAAAAGAGAAACATCTCTCACGCT 403
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 359 AACATCGGATTGTGTCAGCTATCTGTTACATCTGACAAAAAGAGAAACATCTCTCATGCT 418
Query 404 AAAAAGGCCATTGAAGAAGCTGCTTCCAAAGGAGCTAAGCTTGTTCTCTTACCCGAGATT 463
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 419 AAAAAAGCCATTGAAGAAGCTGCTTCTAAAGGAGCTAAGCTTGTTCTCTTACCCGAAATT 478
Query 464 TGGAACAGTCCGTATTCCAATGATAGTTTTCCAGTTTATGCGGAAGACATTGATGCAGGT 523
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 479 TGGAACAGTCCGTATTCCAATGATAGTTTTCCAGTTTATGCGGAGGAGATTGATGCAGGT 538
Query 524 GGTGATGCTTCTCCTTCAACGGCAATGCTTTCTGAAGTTTCTAAACGTCTCAAGATTACA 583
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 GGTGATGCTTCTCCTTCAACGGCAATGCTTTCTGAAGTTTCCAAACGTCTCAAGATTACA 598
Query 584 ATCATTGGTGGCTCTATACCAGAGAGAGTTGGGGATCGTTTGTATAACACTTGCTGTGTC 643
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 599 ATCATTGGTGGATCTATACCAGAAAGAGTTGGAGATCGTTTGTATAACACTTGCTGTGTC 658
Query 644 TTTGGTGCGGATGGAGAGCTCAAAGCTAAGCATCGGAAGATACATTTATTTGATATAGAC 703
|||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTTGGTTCCGATGGAGAGCTAAAAGCTAAGCATCGGAAGATACATTTATTTGATATAGAC 718
Query 704 ATTCCCGGGAAGATTACTTTTATGGAATCCAAAACTCTTACTGCTGGAGAGACACCAACA 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ATTCCCGGGAAGATTACTTTTATGGAATCCAAAACTCTTACTGCTGGAGAGACACCAACA 778
Query 764 ATCGTTGACACAGATGTAGGGCGTATTGGAATAGGCATCTGTTATGATATCAGGTTCCAG 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATCGTTGACACAGATGTAGGGCGTATTGGAATAGGCATCTGTTATGATATCAGGTTCCAG 838
Query 824 GAGTTAGCTATGATATATGCTGCAAGAGGGGCTCATTTGCTGTGCTACCCGGGAGCCTTT 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 GAGTTAGCTATGATATATGCTGCAAGAGGGGCTCATTTGCTGTGCTACCCGGGAGCCTTT 898
Query 884 AACATGACAACTGGACCATTGCATTGGGAATTACTACAAAGGGCCAGGGCTACAGATAAT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 AACATGACAACTGGACCATTGCATTGGGAATTACTACAAAGGGCCAGGGCTACGGATAAT 958
Query 944 CAGTTATATGTGGCGACATGCTCTCCTGCCAGAGATTCAGGAGCTGGCTACACTGCTTGG 1003
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 CAGTTATATGTGGCGACATGCTCACCTGCCAGAGATTCAGGAGCTGGCTACACTGCTTGG 1018
Query 1004 GGGCACTCTACACTTGTCGGGCCTTTTGGAGAAGTACTAGCGACGACTGAGCATGAGGAG 1063
|||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1019 GGGCACTCAACACTCGTTGGGCCTTTTGGAGAAGTACTAGCAACGACTGAGCATGAGGAG 1078
Query 1064 GACATTATCATAGCAGAGATTGATTACTCAATCCTTGAACAACGAAGGACAAGTCTTCCA 1123
| ||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 1079 GCCATTATCATAGCAGAGATTGATTACTCTATCCTTGAACAACGAAGGACTAGCCTTCCA 1138
Query 1124 TTGAATAAGCAGCGGCGGGGAGATCTTTACCAGCTTGTAGACGTACAGCGCTT-GAACTC 1182
||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1139 TTGAATAGGCAGCGGCGGGGAGATCTTTACCAGCTTGTAGACGTACAGCGCTTAGA-CTC 1197
Query 1183 AAAATGAACGCAGGAGGAGTAACTGTACATCTGAGAGATTGTCTTTAGATTGTGTGAGCT 1242
|||||||||||| || |||||||| ||||||||||| | ||| | || |
Sbjct 1198 TAAATGAACGCAGCAG---TAACTGTATATCTGAGAGAT-------A--TTGCG--AGTT 1243
Query 1243 GAGCACGATTTGGTTACTTACAACTTCATG-AT---CAGTTATTTCCCCACAACTTTGCT 1298
|||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||
Sbjct 1244 GAGCACGATTTGGTTACTTACAACTTCATGCATGATCAGTCATTTCTCCACAACTTTGCT 1303
Query 1299 AAGATAC--AA--GAATAAAACT-AT-CTTT-GAGATAAAATCGAACAAAA-CAAGTTAA 1350
||||| || |||||||| | | |||| ||| |||||||||||||| ||||| ||
Sbjct 1304 GAGATATGTAAAAGAATAAAAATCAAACTTTTGAGTTAAAATCGAACAAAGGCAAGTAAA 1363
Query 1351 TTCTGCTTAAGATAATGTGAACTACACCCACTTGCCATGTGTTGGTTGTTTATAAACTTG 1410
||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1364 TTCTGCTTA-GATAATGTGAACTCCACCCACTTGCCATGTGTTTGTTGTTTATAAACTTC 1422
Query 1411 AATGCATTCTGATCATAATGTGGACTTGTGATTCGCAATCAAAATAGCATTTGAC 1465
||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||
Sbjct 1423 AATGCATTCTGATAACAATGTAGACTTGTGATTCGCAATCAGAATAGCATTTGAC 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72238584255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5