BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488048
Length=1355
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1866 0.0
> AT5G12050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G13980.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:3890104-3891513 FORWARD LENGTH=1410
Length=1410
Score = 1866 bits (1010), Expect = 0.0
Identities = 1263/1378 (92%), Gaps = 45/1378 (3%)
Strand=Plus/Plus
Query 1 AAAACAGTTAAGAGACATAAtctctctttttcttcttttgtctcttcttcttctcattct 60
|||||||||| ||||||||||||||||||||| || |||| || |||||||||||||||
Sbjct 33 AAAACAGTTACGAGACATAATCTCTCTTTTTCCTCCTTTG--TC-TCTTCTTCTCATTCT 89
Query 61 tctttAATCCTCTTTATCGATCAAATCATGCATAAATCCAAAAGAAACCCGTCATTCTCC 120
|| | | | |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 90 TC--T--T--T-GTTATCGATCAAAACATGCATAAATCCAAAAGAAACCCGTCATTCTCC 142
Query 121 TCCACTCTCCTCGATGAAATCTACAATTCCATCGATCCTAAAACCCACAAAACACAATCT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 143 TCCACTCTCCTCGATGAAATCTACAATTCCATCGATCCTAAAACCCAAAAAACACAACCT 202
Query 181 TTTGTCGGTTCTGTTAACACTACTACCAAAAAACAGAGCATTGTCACAAGATCGGTCCCT 240
| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 203 TATGTCGGCTCTGTTAACACTACTACCAAAAAACAGAGCATTGTGACAAGATCGGTTCCT 262
Query 241 GACCGGAAAATCCATCGTGATCGGTTCTTCGGCTCTGTATCTTCTTCCTCTGATTCCAAC 300
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 263 GACCGGAAAATCCACCGTGATCGTTTCTTTGGCTCTGTATCTTCTTCCTCTGATTCCAAC 322
Query 301 TCTAGTATTTTCTCATCTTCCGACACCGAACTAACTCACATTAAGAAGACAACTTCTTCT 360
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 323 TCTAGTATTTTCTCATCTTCAGACACCGAACTAACTCACGGTAAGAAGACAACTTCTTCT 382
Query 361 AGGCCGTTATGTTTCGGTCCTTCGAAGTCAAAACCAAGAAAAACAGAGGACAAAACTCTG 420
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 383 AGGCCGTTATGTTTCGGTCCTTCTAAGACAAAACCAAGAAAAACAGAGGATAAAACTCTG 442
Query 421 TTTCACCAAAACAGAGCAACCCGGGTGTACGACGACTACAATTACGCCTCGGACGTCCCA 480
|| |||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 443 TTCCACCAAAACAGAGCTACCCGAGTGTACGACGACTACGATTACGCCTCCGACGTCCCA 502
Query 481 AAATTCACGAGACACGACGAGAACTGGGAGAATCCGAGAAACAGAAGATCAGTGAAGAGA 540
||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||||
Sbjct 503 AAATTCAATAGACACGACGAGAATTGGGAGAATACGAGAAACAGAAGATCGGTGAAGAGC 562
Query 541 TCCGGAAACCAAAAGAAGCCAAAAACTCCAGCTTCACCAGGAGGACGAATCGTTAACTTC 600
||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 563 TCCGGAAACCAAAAGAAACCAAAAACTCCAGCTTCACCTGGAGGAAGAATCGTTAACTTC 622
Query 601 ATAAATTCGTTGTTCAGCAACAATTCAAAACAATCCAATGCGGTTAAAAGTTATCCAAGG 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 623 TTAAATTCGTTGTTCAGCAACAATTCAAAACAATCCAATGCGGTTAAGAGTTATCCAAGG 682
Query 661 AAGACGAGTTACGACGATTCTGCTTTCGTTAGGAAAACAAGTAATGATTATCATTCATCT 720
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 683 AAGACTAGTTACGATGATTCTGCTTACGTTAGGAAAACAAGTAATGATTATCATTCATCT 742
Query 721 ACTACTACGTGTTCTTCAGCTTCTTCTTTCTCAAGATCTTGTATGAACAAAGGCTACGAT 780
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 743 ACTACTACGTGTTCTTCAGCTTCTTCTTTCTCAAGGTCGTGTATGAACAAAGGCTACGAG 802
Query 781 AAATCATCTGATCGTATCAAACGAAGCGTTAGATTTTCTCCGGTCAATGTTATCGTCCCC 840
|||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 803 AAATCATCTGGGCGTATCAAAAGAAGCGTTAGATTTTCCCCGGTCAATGTTATCGTCCCC 862
Query 841 GAGAGCTTTACAAGCAAAGAAGAAGATTATTTCAATAATGGTAACGCAAGAAAATCGGTG 900
|||||||| || |||||||||||||||||||||| ||| |||||||| ||||| ||||||
Sbjct 863 GAGAGCTTCACCAGCAAAGAAGAAGATTATTTCAGTAACGGTAACGCTAGAAAGTCGGTG 922
Query 901 AAGAAGAATGTGGAAGATGGAGGGAGGAGATCAGTGGAGGAAATAGCGAGAGAGTTTTTA 960
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 923 AAGAAGAATGTGGAAGATGGAGGGAGGAGATCAGTGGAGGAGATAGCGAGAGAGTTCTTA 982
Query 961 AGAGATTATCACAAGAATCATGAAAACAGTTTGGTTAAGAATAATGGTTTTGAGGATTat 1020
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 983 AGAGATTATCACAAGAATCATGAAAACAGTTTGGTTAAGACTAATGGTTTTGAGGATTAT 1042
Query 1021 gaagatgatgaagaagaagatgatgatgatgatgatgatgatgTTGCAAGTGATTCGAGT 1080
||||||||||| ||||| |||||||||||||||| | || ||||||||||||||
Sbjct 1043 GAAGATGATGATGAAGACGATGATGATGATGATG-T--TG------CAAGTGATTCGAGT 1093
Query 1081 TCGGATTTGTTTGAGCTGGATTTAGTTGGAAATCATCATCAT-A-A-TGTGTACGGAGAT 1137
|| ||| |||||||||| |||||||||||||||||||||||| | | |||||||||||||
Sbjct 1094 TCAGATCTGTTTGAGCTTGATTTAGTTGGAAATCATCATCATCATAATGTGTACGGAGAT 1153
Query 1138 GAACTTCCTGTGTATGAAACCACTTTTGCTGGTTTGATCTTGTGAAACtttttttctttt 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1154 GAACTTCCTGTGTATGAAACCACTTTTGCTGGTTTGATCTTGTGAAACTTTTTCTCTTTT 1213
Query 1198 ctcttactt-t--a-gatt-ttcgtttaat--a-a-----gtt-t-ta--TT--AATCCA 1238
||||| || | | | || || ||| ||| | | ||| | || || ||||||
Sbjct 1214 CTCTTTTTTGTTCATGTTTATTTGTT-AATTTAGATTTTCGTTGTATAAGTTTTAATCCA 1272
Query 1239 TGTGATTGTTGaaaaaa-gaaaaagaaaTCGCATGTGATTCTCTACATTTGTGTTTGATT 1297
||||||||||||||||| |||||| || ||||||||||||||| || |||||||||||||
Sbjct 1273 TGTGATTGTTGAAAAAAAGAAAAA-AA-TCGCATGTGATTCTCCACTTTTGTGTTTGATT 1330
Query 1298 TTGTAACTATGTTGTGTTATAAATTTTGTGTTTGTAAAAATATGATCCAATCATGTTT 1355
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1331 CAGTAACTATGTTGTGTTATAAATTTTGTGTTTGTAAAAATTTGATCCAATCATGTTT 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66716524305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5