BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488052
Length=2512
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12080.1 | Symbols: MSL10, ATMSL10 | mechanosensitive channe... 3633 0.0
> AT5G12080.1 | Symbols: MSL10, ATMSL10 | mechanosensitive channel
of small conductance-like 10 | chr5:3898047-3901629 REVERSE
LENGTH=2534
Length=2534
Score = 3633 bits (1967), Expect = 0.0
Identities = 2354/2537 (93%), Gaps = 41/2537 (2%)
Strand=Plus/Plus
Query 1 TGGCTTCAGGGTTTAAGCCATTTTTCTCCCACCGCCTCTGTTTTTAAGC--TGCTA-CTG 57
||| ||| ||||||||||||||||| |||||||||||||| | || | || |||
Sbjct 1 TGGTTTCTGGGTTTAAGCCATTTTTTTCCCACCGCCTCTGCAGCTCTGCTTTTTTAGCTG 60
Query 58 GTATTATCATTTATCTAT-ATTTCAGGTCTTCTTCTTCTTATTCAAGAATGAGCTGATAC 116
|||| | ||| | | | ||| ||||||||||||||| |||||||||||||| ||||
Sbjct 61 CTATT-T--TTTTTTTTTGCTTT-TGGTCTTCTTCTTCTTCTTCAAGAATGAGCTAATAC 116
Query 117 TCACAGAAGAAGAAG--TTTTCTTTGGA-TTTTCACTACTGAGCCATTCTTGTGAAATTG 173
||||||||||||||| ||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 117 TCACAGAAGAAGAAGATTTTTCTTTGGATTTTTCACTACTGAGGCATTGTTGTGAAATTG 176
Query 174 GACGCTAGTAGCATTGAAATGGCAGAACAAAAGAGTAGTAAC---GGAGGAGGAGGA-GA 229
|| | ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||
Sbjct 177 GATGGTAGTAGCATTGGAATGGCAGAACAAAAGAGTAGTAACGGAGGAGGAGGAGGAGGA 236
Query 230 -A-GTTGTTATCAATGTTTCTGGTGAGGAAGCATCAAAGCGTTCCATGGAAATGGCTTCA 287
| ||||||||||||||| | | |||||||||||||| |||||||| |||||||||||||
Sbjct 237 GATGTTGTTATCAATGTTCCAGTTGAGGAAGCATCAAGGCGTTCCAAGGAAATGGCTTCA 296
Query 288 CCAGAGTCTGAGAAAGGAGTGCCCATCAGTAAAAGCCCTTCTCCTGAAATCTCTAAGCTT 347
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 297 CCAGAGTCTGAGAAAGGAGTTCCCTTTAGTAAAAGCCCTTCTCCTGAAATCTCTAAGCTT 356
Query 348 GTTGGTAGTCCTAACAAGCCTCCCAGAGCTCCAAATCAGAACAGTGGGGGTCTAACTCAG 407
||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 357 GTTGGTAGTCCTAACAAGCCTCCTAGAGCTCCAAATCAGAACAATGTGGGTCTAACTCAG 416
Query 408 AGGAAATCTTTTGCGAGGTCGGTTTACTCAAAACCCAAGTCCCGGTTTGTGGATCCATCT 467
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 417 AGGAAATCTTTTGCAAGGTCGGTTTACTCAAAACCCAAGTCCCGGTTTGTTGATCCATCT 476
Query 468 TGTCCTGTAGACACAACTGTTCTAGAGGAGGAAGTTAGGGAGCAACTTGGTGCCGGTTTT 527
|||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 477 TGTCCTGTAGACACAAGTATTCTAGAGGAGGAAGTTAGGGAGCAACTTGGTGCTGGTTTT 536
Query 528 TCTTTTAGTAGATCTTCTCCGAATAACAAATCGAATAGGAGTGTCGGGTCAACAGCACC- 586
|||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 537 TCTTTTAGTAGAGCTTCTCCGAATAACAAATCTAATAGGAGTGTCGGGTCACCAGCACCG 596
Query 587 GTTAACTCCAAGTAAAGCCGTTGTGGAGAAAGATGAAGATGAGGAAATCTACAAGAAGGT 646
||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 597 GTT-ACTCCAAGTAAAGTCGTTGTTGAGAAAGATGAGGATGAGGAAATCTACAAGAAGGT 655
Query 647 TAAGCTGAACAAAGAGATGCGCAGTAAGATAAGTACATTGGCTTTGATAGAGTCAGCTTT 706
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TAAGCTGAACAGAGAGATGCGCAGTAAGATAAGTACATTGGCTTTGATAGAGTCAGCTTT 715
Query 707 CTTTGTGGTGATTTTGAGCGCTTTGGTTGCGAGTTTAACCATTAATGTCCTGAAAAATCA 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 CTTTGTGGTGATTTTGAGCGCTTTGGTTGCGAGTTTAACCATTAATGTCCTGAAACATCA 775
Query 767 CACCATCTGGGGACTAGAAGTCTGGAAATGGTGTGTGCTTGTCATGGTTATATTCAGTGG 826
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 776 CACCTTCTGGGGGCTAGAAGTCTGGAAATGGTGTGTGCTTGTGATGGTTATATTCAGTGG 835
Query 827 AATGTTGGTGACCAATTGGTTCATGCGTTTGGTTGTGTTCCTCATAGAAACAAACTTTCT 886
|||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 AATGTTGGTGACAAACTGGTTCATGCGTTTGATTGTGTTCCTCATAGAAACAAACTTTCT 895
Query 887 TTTGAGGAGAAAAGTGCTCTACTTTGTGCACGGCTTGAAGAAGAGCGTCCAAGTCTTCAT 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 896 TTTGAGGAGAAAAGTGCTCTACTTTGTGCACGGCTTGAAGAAGAGCGTCCAAGTTTTCAT 955
Query 947 ATGGCTCTGCTTGATTCTTGTTGCTTGGATATTGTTGTTCAACCGCGATGTGAAACGGTC 1006
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 956 TTGGCTCTGCTTGATTCTTGTTGCTTGGATATTGTTGTTCAACCACGACGTGAAACGGTC 1015
Query 1007 CCAGGCAGCTACAAAAATCCTCAAC-GTCATAACCAGGACTCTTATTTCCGTTCTTAC-G 1064
|| ||||| || ||| ||||||| || || |||||||||||||||||| ||||||| |
Sbjct 1016 CCCCGCAGCCACCAAAGTCCTCAAATGT-ATTACCAGGACTCTTATTTCCATTCTTACAG 1074
Query 1065 GGGTCATTCCTTTGGCTGGTGAAAACATTGTTGTTGAAAATCCTTGCAGCAAATTTCAAC 1124
||| ||||| ||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 1075 GGG-CATTCTTTTGGCTGGTGAAAACACTCTTGTTGAAAATCCTTGCAGCGAATTTCAAC 1133
Query 1125 GTCAATAACTTTTTCGACAGGATTCAAGATTCTGTTTTCCACCAGTATGTTCTACAAACG 1184
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GTCAATAACTTTTTCGATAGGATTCAAGATTCTGTTTTCCACCAGTATGTTCTACAAACG 1193
Query 1185 CTCTCGGGTCCTCCACTTATCGAAGAGGCAGAAAGGGTTGGGCGTGAGCCAAGCACCGGC 1244
|||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1194 CTCTCGGGTCTTCCACTTATGGAAGAGGCAGAGAGGGTCGGGCGTGAGCCAAGCACAGGC 1253
Query 1245 CATTTGAGTTTTGCTAGTGTAGTGAAAAAAGGAACGGTTAAAGAAAAGAAAGTGATTGAT 1304
||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1254 CATTTGAGTTTCGCGACTGTAGTGAAAAAAGGAACGGTTAAAGAGAAGAAAGTGATTGAT 1313
Query 1305 ATGGGGAAAGTTCATAAGATGAAGCGAGAGAAAGTTTCTGCTTGGACAATGCGGGTTTTG 1364
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1314 ATGGGGAAAGTTCATAAGATGAAGCGGGAGAAAGTTTCGGCTTGGACTATGCGAGTTTTG 1373
Query 1365 GTAGAAGCTGTTAGAACTTCAGGTCTCTCTACAATCTCTGACACATTGGACGAAACAACA 1424
| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1374 ATGGAAGCGGTTAGAACTTCAGGTCTCTCTACTATCTCTGACACATTGGACGAAACAGCA 1433
Query 1425 TACGGTGAGGGGAAAGAGCAAGCTGATAGAGAAATTACTAGTGAGATGGAGGCTTTGGCT 1484
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1434 TACGGCGAGGGGAAAGAGCAAGCTGACAGAGAAATTACTAGTGAGATGGAGGCTTTGGCT 1493
Query 1485 GCTGCTTACCATGTATTCAGGAATGTTGCTCAGCCTTTCTTCAATTACATAGAGGAAGAG 1544
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1494 GCTGCTTACCATGTCTTCAGAAATGTTGCTCAGCCCTTCTTCAATTACATAGAGGAAGAG 1553
Query 1545 GACTTACTTAGGTTCATGATTAAGGAAGAGGTTGATCTTGTGTTCCCATTGTTTGATGGT 1604
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GACTTGCTTAGGTTTATGATTAAGGAAGAGGTTGATCTTGTGTTCCCATTGTTTGATGGT 1613
Query 1605 GCTGCCGAGACCGGGAAAATCACAAGAAAAGCTTTCACAGAATGGGTGGTTAAAGTGTAC 1664
|| || |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1614 GCCGCTGAGACCGGGAGAATTACAAGAAAAGCTTTCACAGAATGGGTGGTTAAGGTGTAC 1673
Query 1665 ACGAGCCGGAGAGCTTTAGCGCATTCGTTAAATGACACAAAAACAGCGGTTAAGCAGTTA 1724
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1674 ACGAGCCGGAGAGCTTTAGCGCATTCCTTAAACGACACAAAAACAGCGGTTAAGCAGTTA 1733
Query 1725 AACAAACTTGTGACAGCAATCTTGGTTGTGATTACCGTTGTCATTTGGCTACTGCTTCTA 1784
|||||||||||||||||||||||| | ||| ||||||||||||||||||| || ||||||
Sbjct 1734 AACAAACTTGTGACAGCAATCTTGATGGTGGTTACCGTTGTCATTTGGCTGCTCCTTCTA 1793
Query 1785 GAATTAGCAACGACTAAGGTTTTGTTGTTCTTCTCCACCCAACTCGTGGCTCTGGCTTTT 1844
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1794 GAAGTAGCAACGACTAAGGTTTTGCTGTTCTTCTCCACCCAACTCGTGGCTCTGGCTTTT 1853
Query 1845 ATAATCGGAAGCACATGCAAAAATCTCTTTGAATCAATTGTGTTTGTCTTCGTTATGCAT 1904
||||||||||||||||||||||| ||||||||||| |||||||| || ||||| ||||||
Sbjct 1854 ATAATCGGAAGCACATGCAAAAACCTCTTTGAATCCATTGTGTTCGTATTCGTCATGCAT 1913
Query 1905 CCTTATGATGTAGGTGATCGATGTGTTGTCGACGGTGTAGAGATGCTGGTTGAAGAAATG 1964
||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||||
Sbjct 1914 CCTTATGATGTCGGTGATCGATGTGTTGTTGACGGTGTCGCGATGCTGGTGGAAGAAATG 1973
Query 1965 AATCTGTTAACGACGGTGTTCTTGAAGCTAAACAACGAGAAAGTGTATTATCCGAACGCT 2024
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1974 AATCTCTTAACGACAGTGTTCTTGAAGCTTAACAACGAGAAAGTGTATTATCCGAACGCT 2033
Query 2025 GTTTTGGCTACGAAACCCATAAGCAATTACTTCAGAAGTCCGGATATGGGAGAAACAGTG 2084
|||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 2034 GTTTTGGCCACGAAACCGATAAGCAATTACTTCAGAAGTCCGAATATGGGAGAAACAGTG 2093
Query 2085 GAATTCTCTATCTCATTCTCGACACCAGTCTCCAAGATCGCACATCTCAAAGAAAGAATC 2144
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 2094 GAATTCTCTATCTCTTTCTCGACACCAGTCTCTAAGATAGCACATCTCAAAGAAAGAATC 2153
Query 2145 GCCGAGTACTTGGAGCAGAACCCGCAGCATTGGGCACCGGTTCACACGGTGGTGGTGAAG 2204
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 2154 GCCGAGTACTTGGAGCAGAACCCGCAACATTGGGCACCGGTTCACTCGGTGGTGGTGAAG 2213
Query 2205 GAGATAGAGAACATGAACAAGCTGAAGATGGCCCTATACAGTGACCACACCATCACGTTT 2264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2214 GAGATAGAGAACATGAACAAGCTGAAGATGGCCCTATACAGTGACCACACCATCACGTTT 2273
Query 2265 CAGGAAAACAGAGAGAGGAATCTCAGAAGAACCGAACTTGT-TTTGAACATTAAGAGAAT 2323
||||||||||||||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 2274 CAGGAAAACAGAGAGAGGAATCTTAGAAGAACCGAACTT-TCTTTGGCCATTAAGAGAAT 2332
Query 2324 CTTGGAGGACCTTCACATCGACTACACTCTCCTTCCTCAAGA-AGTTAATCTCACCAAGA 2382
||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 2333 GTTGGAGGACCTTCACATCGACTACACTCTCCTTCCTCAAGACA-TTAATCTCACAAAGA 2391
Query 2383 AGAA-T--TGAGAACCAATTTATAACCGGTTTGGTGTTTTTTCTAAACCGTTACTT-TAA 2438
|||| | |||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 2392 AGAACTGATGAGAACCAATTTAAAACCGGTTTGGTGTTTTTTCTAAACCGTTG-TTATAA 2450
Query 2439 GA--TT-TTATTACCAAACTTTGCGGTACTGGTACTGTTTTGTTTTAGGCTTTTAGAGTA 2495
|| || |||||||||||| ||| | | | |||||||||||| ||||||||||||||
Sbjct 2451 GACATTATTATTACCAAACGTTGTG--A-T---ACTGTTTTGTTTAAGGCTTTTAGAGTA 2504
Query 2496 GAAGATGAAATCAATTT 2512
|| ||||||||||||||
Sbjct 2505 GATGATGAAATCAATTT 2521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124664853355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5