BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488059
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance trans... 2429 0.0
AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance trans... 662 0.0
> AT5G12170.2 | Symbols: CLT3 | CRT (chloroquine-resistance transporter)-like
transporter 3 | chr5:3931562-3935129 FORWARD
LENGTH=1614
Length=1614
Score = 2429 bits (1315), Expect = 0.0
Identities = 1535/1635 (94%), Gaps = 39/1635 (2%)
Strand=Plus/Plus
Query 1 AAAGGCAAAGTCCAAGTCAGCAACTCACTTCCGTCTCTCT-CTCC-C----CC-TCAAAA 53
|||||||||||||||||||||||||||||||||||||||| | || | || || ||
Sbjct 1 AAAGGCAAAGTCCAAGTCAGCAACTCACTTCCGTCTCTCTCCCCCTCAAAACCAGCAGAA 60
Query 54 CCAGTCTCATTCGAT-CTCTAATCCACCATGGCAACGACTTCTCGTCGGTTTACCACCGG 112
||||||||| ||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 CCAGTCTCACTCGATCCT-TAATCCACCATGGCAACGACTTCTCGCCGGTTTACCACCGG 119
Query 113 TTTAACCGCCTCGATCACCTTGGTCGAATCCCATTCCGCAAACCGACCTCAGTCCATCTC 172
|||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||
Sbjct 120 TTTATTCGCCTCGATCACCTCGGTCAAATCCCATTCCGCAAACCGACCTCAATCCATCTC 179
Query 173 CCTCATCCGTCGAAACCACACCGATCCTCGTCGTCTACCGTCGATCCTTCCAAGTTCCAG 232
||| |||||||||||||||| ||| || ||||||||||| |||| |||||||||||||
Sbjct 180 CCTAATCCGTCGAAACCACATCGA---TCATCGTCTACCGTTGATCGTTCCAAGTTCCAG 236
Query 233 GCGGTGGATTATTGAAGCGGTGTCACCAGCGAGATCCTGGGATGGATCTGATTACGGAGC 292
|||||||||||| |||| | ||||||||||||||||||| ||| |||||||
Sbjct 237 GCGGTGGATTATCCAAGC---G------GCGAGATCCTGGGATGGATTTGACGACGGAGC 287
Query 293 TGAGGCGGAGATTAAAAAGCCAGGCGCGTGTGGTTACGCGATCGGCGATAACGAGATGGA 352
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 288 TGAGGCGGAGATTAAGAAGCCAGGCGCGTATGGTTACGCGATCGGCGATAACGAGATCGA 347
Query 353 AGGGAGC------AGTACTGTCCATGTGATCGACGGAGAGCATGTTAAGACGGCGGAGAT 406
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGGGAGCAGTAGTAGTACTGTCCATGTGATCGACGGAGAGCATGTTAAGACGGCGGAGAT 407
Query 407 AGTGATTTGGGCGGCGGCTACGGCGGCGTTTGGCGTCGGAAACAGAGTGATGTATAAGCT 466
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 AGTGATATGGGCGGCGGTTACGGCGGCGTTTGGCGTCGGAAACAGAGTGATGTATAAGCT 467
Query 467 CGCGCTAGTTCCACTCAAGGAGTATCCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTA 526
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 CGCGTTAGTTCCACTCAAGGAGTATCCTTTCTTCCTTGCGCAACTCTCCACCTTCGGGTA 527
Query 527 TGTAGCTGTATATTATACTATCTTGTATTTTCGATATCGTGCTGGAACTGTCACAGAGGC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 TGTAGCTGTATATTATACTATCTTGTATTTTCGATATCGTGCTGGAACTGTCACAGATGC 587
Query 587 AATGCTCTCGGTGCCAAAATCTCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 AATGCTCTCGGTGCCAAAATCTCCATTTTTAATTGTTGGCATCTTAGAGGCTCTAGCTGC 647
Query 647 AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCTACTACAGTTTTATCTCA 706
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 648 AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCAACGACAGTTTTATCTCA 707
Query 707 GACATTTCTTGTCTGGCAAATTTTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCGT 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GACATTTCTTGTCTGGCAAATTTTCTTCTCCATTATTTTTCTCGGGAGGAGATATAGCGT 767
Query 767 AAACCAAATACTCGGATGCACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGG 826
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AAACCAAATACTCGGATGTACTCTTGTAGCTCTCGGTGTAATCGTCAGTGTGGCAAGTGG 827
Query 827 ATCAGGTGCTGCTCATTCATTGAAGGAAGCCGGAGTATTATGGATTCTTCTAACGGTCCT 886
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 828 ATCAGGTGCTGCTCATTCATTGAATGAAGCCGGAGTATTATGGATTCTTCTAATGGTTCT 887
Query 887 CTCTTTCTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCCT 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTCTTTCTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCTTTATAGATAGCC- 946
Query 947 AAA-ACGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTT 1005
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AAAGACGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCATATGGTTCAGCTT 1006
Query 1006 TCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGT 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTTTGGGGCATACCGT 1066
Query 1066 TTAACCAACTCGGTACCTACCTAAAAGATGGCGCAGTTTGCTTTCTCAACCACGGGACAA 1125
||||||||||||||||||||||||||||||| || ||||| ||||||||| | |||||||
Sbjct 1067 TTAACCAACTCGGTACCTACCTAAAAGATGGTGCGGTTTGTTTTCTCAACAATGGGACAA 1126
Query 1126 TAACAAAAGGATGTGATGGGGCACCGTTTTTGCCTCTATTGTTTGTGACAATGAACATTG 1185
|||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||
Sbjct 1127 TAACAAAAGGATGTGATGGGGCTCCGTTTTTGCCTCTGTTGTTTGTGATAATGAACATTG 1186
Query 1186 GCTATAACATTGCTCTTTTAAGACTCCTCAAGATTTCATCGGCCGTGGTTTCGTGTCTTG 1245
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1187 GCTATAACATTGCTCTTTTAAGACTCCTCAAGATTTCATCCGCGGTGGTTTCATGTCTTG 1246
Query 1246 CATCAACAGTTTCAGTGCCAATTGCAGTGTTTCTGTTCACAATGCCATTACCGTACCTTG 1305
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CATCAACAGTCTCAGTGCCAATTGCAGTGTTTCTGTTCACAATGCCATTACCGTACCTTG 1306
Query 1306 GAGTTGCATCATCATTACCAAAAGGGTTCATGGGAGGAACAGTCATACTTGTATTGGGAA 1365
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1307 GAGTTGCATCATCACTACCAAAAGGGTTCATGGGAGGAACAATCATACTTGTATTGGGAA 1366
Query 1366 TGATTCTTTACAGTTGGACACCACAAGGAGCTAACTCTTCTCATACTGATACAGTCATTC 1425
|||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1367 TGATTCTTTATAGTTGGACACCACACGGAGCTAACTCTTCTCATACTGATTCAGTCATTC 1426
Query 1426 CTTCACCTCCTCCCACCTAGACAGGGCTTAATTAAGGGTTTTTGCTTTTAT-TAAAAGAT 1484
||||||||||||| || |||| ||||||||| |||||| |||||||||||| |||| |||
Sbjct 1427 CTTCACCTCCTCCAACATAGAGAGGGCTTAACTAAGGGGTTTTGCTTTTATATAAA-GAT 1485
Query 1485 TTGAGAGATTTATGCAAATTCGGTTTGTACGTATCAAGATAAAATAATATTTGATCATAT 1544
|||||||||||||||||||||||||||| || | || ||||| | ||||||||||||||
Sbjct 1486 TTGAGAGATTTATGCAAATTCGGTTTGT--GTTT-AA-ATAAACTTATATTTGATCATAT 1541
Query 1545 AATGTTAATGGAAAAGTTGACATTTCT-TGTGTGTTGCGTTCAGATTAG-ATTCCTAGTT 1602
|||||||||||||||||||||||| | ||||||||||||||| ||||| |||| |||||
Sbjct 1542 GATGTTAATGGAAAAGTTGACATTT-TGTGTGTGTTGCGTTCACATTAGTATTC-TAGTT 1599
Query 1603 CATTAGTCAACAGCT 1617
||||||||||| |||
Sbjct 1600 CATTAGTCAACGGCT 1614
> AT5G19380.2 | Symbols: CLT1 | CRT (chloroquine-resistance transporter)-like
transporter 1 | chr5:6526807-6530592 REVERSE
LENGTH=1881
Length=1881
Score = 662 bits (358), Expect = 0.0
Identities = 715/884 (81%), Gaps = 38/884 (4%)
Strand=Plus/Plus
Query 524 GTATGTAGCTGTATA-TTATACTATCTTGTATTTTC-GATATCGTGCTGGAACTGTCACA 581
||||||||||||||| || | | || ||||| |||| |||| || ||||||| ||| |||
Sbjct 759 GTATGTAGCTGTATACTT-TTCGATTTTGTA-TTTCAGATACCGAGCTGGAATTGTTACA 816
Query 582 GAGGCA-ATGCTCTCGGTGCCAAAATC-TCCATTTTTAATTGTTGGCATCTTAGAGGCTC 639
| | | ||||| || || |||||| | ||||||||||||||||||| |||| ||| |||
Sbjct 817 AAAG-AGATGCTATCAGTTCCAAAA-CTTCCATTTTTAATTGTTGGCGTCTTGGAGTCTC 874
Query 640 TAGCTGC-AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCTACTACAGTT 698
| ||| | ||||||||| ||||| |||||| | |||||||| || |||||||||||||||
Sbjct 875 TTGCT-CTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTT 933
Query 699 TTATCTCAGACATTTCTTGTCTGGCAAATT-TTCTTCTCCATTATTTTTCTCGGGAGGAG 757
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 934 TTATCTCAGACATTTCTTGTCTGGCAAATTCTT-TTCTCCATTATATTTCTCGGGAGGAG 992
Query 758 ATATAGCGTAAACCAAATACTCGGATGCACTCTTGTAGC-TCTCGGTGTAATCGTCAGTG 816
|||||| |||| |||||| | ||||| ||||||||||| | | ||||||||||||||||
Sbjct 993 ATATAGAATAAATCAAATATTGGGATGTACTCTTGTAGCATTT-GGTGTAATCGTCAGTG 1051
Query 817 TGGCAAGTGGATCAGGTGCTGCTCATTCATTGAAGGA-AGCCGGAGTA-TTATGGATTCT 874
| |||||||| || ||||| ||||||||||| || || | | ||| || || |||| |||
Sbjct 1052 TAGCAAGTGGGTCGGGTGCCGCTCATTCATTTAAAGATA-CAGGAATACTT-TGGAGTCT 1109
Query 875 TCTAACGGTCCTCTCTTT-CTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCT 933
||| | ||| | ||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 1110 TCTTATGGTGTTTTCTTTTCT-GCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCT 1168
Query 934 TTATAGATAGCCTAAAA-CGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCA 992
|| |||||||| |||| ||||| |||||||||||||| ||| | ||| | ||||| |||
Sbjct 1169 TTCTAGATAGCA-AAAAGCGATTGAAGGGTGCTTCACTTGATTTGTTTGTTGTAAACTCA 1227
Query 993 TATGGTTCAGCTTTCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTT 1052
||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1228 TATGGTTCAATTTTCCAAGTCATATGCATTGCGTTGCTTCTTCCTTTTCTTTCAAAGCTT 1287
Query 1053 TGGGGCATACCGTTTAACCAACT-CGGTACCTACCTAAAAGATGGCGCAGTTTGCTTTCT 1111
||||||||||||||||||||||| | | | ||| | | ||| || | | |||||||||
Sbjct 1288 TGGGGCATACCGTTTAACCAACTACCG-AGCTATATCAGAGACGGGGGTGCTTGCTTTCT 1346
Query 1112 CAACCACGGGA-CAATAACAAAAGGATGTGATGGGGCACCGTTT-TTGCCTCTATTGTTT 1169
|| | || | | || || |||||| || ||||| || || || ||| || |||||
Sbjct 1347 AAAT-ATTGGTTCTAGAATAACAGGATGCGAAGGGGCTCCCCTTCTT-CCTGTAATGTTT 1404
Query 1170 GTGACAATGAACATTGGCT-ATAACAT-TGCTCTTTTAAGACTCCTCAAGATTTCATCGG 1227
|| | |||||||| |||| ||||||| | ||||| || | ||| ||||||||||||| |
Sbjct 1405 GTCATGATGAACAT-GGCTTATAACATCT-CTCTTCTACGCCTCATCAAGATTTCATCTG 1462
Query 1228 CCGTGGTTTCGTGTCTTGCATCAACAGTTTCAGTGCCAATTGCAGTGTTTCTGTT-CACA 1286
| || || |||| ||| ||||| || ||||||||||| || || |||| ||||| |||
Sbjct 1463 CAGTTGTGTCGTCTCTGGCATCCACCGTTTCAGTGCCCATAGCGGTGTA-CTGTTTCACG 1521
Query 1287 ATGCCATTACCGTACCTTGGAGTTGCATC-ATCATTACCAAAAGGGTTCATGGGAGGAAC 1345
| || |||| |||||||| || ||||| | || |||||| ||||| | | ||| ||
Sbjct 1522 CTTCCCCTACCATACCTTGGGGTGGCATCTA-CACTACCAAGGGGGTTTGTTGCAGGCAC 1580
Query 1346 AGTCATACTTGTATTGGGAATGATTCTTTACAG-TTGGACACCA 1388
| |||| |||||| | || ||| |||| || | ||||||||||
Sbjct 1581 AATCATCCTTGTAGTCGGCATGCTTCTATAT-GCTTGGACACCA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5