BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488060
Length=1940
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12180.1 | Symbols: CPK17 | calcium-dependent protein kinase... 2996 0.0
AT5G19360.1 | Symbols: CPK34 | calcium-dependent protein kinase... 1724 0.0
> AT5G12180.1 | Symbols: CPK17 | calcium-dependent protein kinase
17 | chr5:3937024-3939596 FORWARD LENGTH=1972
Length=1972
Score = 2996 bits (1622), Expect = 0.0
Identities = 1789/1867 (96%), Gaps = 21/1867 (1%)
Strand=Plus/Plus
Query 1 aaaaaaa-TAAGAGAAG--AAAGAC---AAAATCTAAAACCTTTCTATTTCTCTTCCTCC 54
||||||| ||||||||| ||| || |||| ||||||||||||||||||||||||||
Sbjct 6 AAAAAAAGTAAGAGAAGAAAAACACAAAAAAAAATAAAACCTTTCTATTTCTCTTCCTCC 65
Query 55 TTTGAGCCTTT-A-C-CTCCTCCATCT-CCCCACCCTTTTATGCAACAATGGGAAATTGT 110
|||||| |||| | | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 66 TTTGAG-CTTTGACCTCTCCTCCATCTCCCCCACCCTTTTATGCAACAATGGGAAATTGT 124
Query 111 TGCTCTCACGGACGGGACTCAGCCGATAACGGAGATGGACACACACTGGAAAACGGAGCT 170
|||||||||||||||||||||||||||||| | || | || || ||||||||||||||
Sbjct 125 TGCTCTCACGGACGGGACTCAGCCGATAAC-G-GA--G--ACGCATTGGAAAACGGAGCT 178
Query 171 ACCGCTTCAAATGCTGCCAATTCCACTGGTCCAACCGCGGAAGCTTCGGTACCACAATCG 230
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 179 TCCGCTTCAAATGCTGCCAATTCGACTGGTCCAACCGCGGAAGCTTCTGTACCACAATCA 238
Query 231 AAACATGCGCCTCCTTCTCCTCCTCCGGCAACCAAACAAGGCCCTATAGGACCTGTCCTA 290
|||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct 239 AAACATGCACCTCCTTCTCCTCCTCCTGCAACCAAACAAGGCCCTATAGGCCCTGTCTTA 298
Query 291 GGTCGACCCATGGAAGATGTAAAATCTTCATATTCTTTAGGGAAAGAGCTCGGGCGAGGC 350
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 299 GGTCGACCCATGGAAGATGTAAAAGCTTCATATTCTTTAGGGAAAGAGCTCGGGCGAGGC 358
Query 351 CAATTCGGTGTCACACACCTCTGCACACAGAAGGCAACAGGTCATCAATTTGCTTGCAAG 410
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAATTTGGTGTCACACACCTCTGCACACAGAAGGCAACAGGTCATCAATTTGCTTGCAAG 418
Query 411 ACCATTGCGAAAAGGAAGCTTGTGAACAAGGAAGACATTGAGGATGTAAGAAGAGAAGTG 470
|| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 419 ACGATTGCAAAAAGAAAGCTTGTAAACAAGGAAGACATTGAGGATGTAAGAAGAGAAGTG 478
Query 471 CAGATAATGCATCACCTGACTGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCTTATGAG 530
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 479 CAGATAATGCATCACTTGACTGGTCAACCAAACATTGTGGAGCTTAAAGGGGCTTATGAG 538
Query 531 GATAAGCATTCCGTGCATTTGGTTATGGAGCTTTGCGCAGGTGGAGAGTTGTTCGATAGG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GATAAGCATTCCGTGCATTTGGTTATGGAGCTTTGCGCAGGTGGAGAGTTGTTCGATAGG 598
Query 591 ATTATTGCTAAAGGACATTACTCGGAGAGAGCAGCTGCTTCGTTGCTAAGAACGATTGTT 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTATTGCTAAAGGACATTACTCGGAGAGAGCAGCTGCTTCGTTGCTAAGAACGATTGTT 658
Query 651 CAGATTGTGCATACTTGCCATTCCATGGGGGTGATTCACAGGGATTTGAAACCAGAGAAC 710
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 CAGATTGTGCATACTTGCCATTCCATGGGGGTGATTCACAGGGATTTGAAGCCAGAGAAC 718
Query 711 TTTCTCTTGCTCAACAAAGATGAGAATTCTCCTCTCAAAGCTACTGACTTTGGGTTGTCG 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTCTCTTGCTCAACAAAGATGAGAATTCTCCTCTCAAAGCTACTGACTTTGGGTTGTCG 778
Query 771 GTTTTTTACAAGCCAGGAGAGGTGTTCAAGGATATTGTGGGGAGTGCTTATTACATCGCA 830
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 GTTTTCTACAAGCCAGGAGAGGTATTCAAGGATATTGTGGGGAGTGCTTATTACATCGCA 838
Query 831 CCAGAGGTTTTAAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATG 890
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCTGAGGTTTTGAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATG 898
Query 891 TTGTATATCCTCTTATGTGGTGTCCCACCATTCTGGGCTGAGTCGGAGAACGGGATATTC 950
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 TTGTATATCCTCTTATGTGGTGTCCCGCCATTCTGGGCTGAGTCGGAGAACGGGATATTC 958
Query 951 AACGCCATCCTAAGGGGACATGTTGATTTCTCAAGTGATCCATGGCCATCTATCTCGCCT 1010
||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 AACGCAATCCTTAGGGGACATGTTGATTTCTCAAGTGATCCATGGCCATCCATCTCGCCT 1018
Query 1011 CAGGCGAAGGATCTTGTTAAGAAGATGCTCAACTCTGATCCCAAGCAAAGATTAACTGCT 1070
||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1019 CAGGCAAAGGATCTTGTTAAGAAGATGCTCAACTCTGATCCAAAGCAAAGACTAACTGCT 1078
Query 1071 GCCCAAGTTCTCAACCATCCATGGATCAAGGAGGATGGAGAGGCACCAGATGTTCCTCTT 1130
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GCTCAAGTTCTCAACCATCCATGGATCAAGGAGGATGGAGAGGCACCAGATGTTCCTCTT 1138
Query 1131 GACAATGCGGTGATGTCAAGGCTCAAGCAGTTCAAAGCAATGAACAATTTCAAGAAAGTT 1190
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 1139 GATAATGCGGTGATGTCCAGGCTCAAACAATTCAAAGCAATGAACAATTTCAAGAAAGTT 1198
Query 1191 GCATTACGGGTGATAGCAGGCTGCTTATCAGAGGAAGAGATCATGGGGTTGAAGGAGATG 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCATTACGGGTGATAGCAGGCTGCTTATCAGAGGAAGAGATCATGGGGTTGAAGGAGATG 1258
Query 1251 TTTAAAGGTATGGACACTGATAGCAGTGGAACAATTACACTCGAGGAGTTAAGACAGGGA 1310
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1259 TTTAAAGGTATGGATACTGATAGTAGTGGAACAATTACACTCGAGGAGTTAAGACAAGGA 1318
Query 1311 CTTGCCAAGCAAGGTACAAGGTTGTCAGAATATGAAGTTCAGCAGCTAATGGAAGCTGCT 1370
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1319 CTTGCTAAGCAAGGTACAAGGTTGTCAGAATATGAAGTTCAGCAGTTAATGGAAGCTGCT 1378
Query 1371 GATGCTGATGGTAATGGAACAATAGACTATGGTGAGTTTATCGCAGCAACAATGCACATC 1430
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 1379 GATGCTGATGGTAATGGAACAATAGACTATGGCGAGTTTATCGCAGCCACAATGCATATC 1438
Query 1431 AACAGACTTGACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAAC 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AACAGACTTGACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAAC 1498
Query 1491 AGTGGATATATCACAATGGAAGAGCTGGAGCAAGCCCTCCGGGAGTTTGGCATGAATGAT 1550
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1499 AGTGGATATATCACAATGGAAGAGCTAGAGCAAGCCCTACGGGAGTTTGGCATGAATGAT 1558
Query 1551 GGCAGAGACATTAAGGAGATCATTTCCGAGGTTGATGGAGACAATGATGGTCGGATAAAC 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGCAGAGACATTAAGGAGATCATTTCCGAGGTTGATGGAGACAATGATGGTCGGATAAAC 1618
Query 1611 TATGATGAATTTGTGGCAATGATGAGAAAAGGAAACCCGGATCCAATCCCAAAAAAGCGG 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1619 TATGATGAATTTGTGGCAATGATGAGAAAAGGAAACCCGGATCCAATCCCAAAGAAGCGG 1678
Query 1671 CGTGAACTTTCATTCAAATGAACA-AATTGTTGAAGTAGAGGAAGAGAGGAGATAGAAAG 1729
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1679 CGTGAACTTTCATTCAAATGAACACAATTGTTGAAGTAGAGGAAGAGAGGAGATAGAAAG 1738
Query 1730 AGAGTTACACACAGGGGTCGAGAAACTCATCTTCCTTTTCACAATGAGAGATAAGGCAAA 1789
|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 1739 AGAGTTACACACAGGGGTCGAGAAACTCATCTTCCTTT-CAAAATGAGAAATAAGGCAAA 1797
Query 1790 GCAAATATCAAA-AAAGTATATGCTCAACTGGAGGAGATCTTTAAGGGAGGAGAAGGATC 1848
|||||||||||| ||| | ||| || || |||||||||||||||||||||||||||| ||
Sbjct 1798 GCAAATATCAAAGAAAAT-TATTCTAAAGTGGAGGAGATCTTTAAGGGAGGAGAAGGCTC 1856
Query 1849 AAGAAGG 1855
|||||||
Sbjct 1857 AAGAAGG 1863
> AT5G19360.1 | Symbols: CPK34 | calcium-dependent protein kinase
34 | chr5:6521716-6523780 REVERSE LENGTH=1572
Length=1572
Score = 1724 bits (933), Expect = 0.0
Identities = 1282/1453 (88%), Gaps = 14/1453 (1%)
Strand=Plus/Plus
Query 246 TCTCCTCCTCCGGCAACCAAACAAGGCCCTATAGGACCTGTCCTAGGTCGACCCATGGAA 305
||||||||||| |||||||||||||| || |||||||||||| |||| ||||| ||||||
Sbjct 127 TCTCCTCCTCCTGCAACCAAACAAGGACCAATAGGACCTGTCTTAGGGCGACCAATGGAA 186
Query 306 GATGTAAA-ATCTTCATATTCTTTAGGG-AAAGAGCTCGGGCGAGGCCAATTCGGTGTCA 363
|||||||| | | |||||| | || ||| || ||||| || || || || || || || |
Sbjct 187 GATGTAAAGAGC-TCATATACATT-GGGTAAGGAGCTAGGTCGTGGACAGTTTGGGGTGA 244
Query 364 CACACCTCTGCACACAGAAGGCAACAGGTCAT-CAATTTGCTTGCAAGACCATTGCGAAA 422
| || |||||||| || ||||| || || | | ||||| ||||||||||||||||| |||
Sbjct 245 CTCATCTCTGCACGCAAAAGGCCACGGGGC-TGCAATTCGCTTGCAAGACCATTGCTAAA 303
Query 423 AGGAAGCTTGTGAACAAGGAAGACATTGAGGATGTAAGAAGAGAAGTGCAGATAATGCAT 482
|||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||
Sbjct 304 AGGAAGCTCGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAGATTATGCAT 363
Query 483 CACCTGACTGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCTTATGAGGATAAGCATTCC 542
||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 364 CACTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGATAAGCATTCT 423
Query 543 GTGCATTTGGTTATGGAGCTTTGCGCAGGTGGAGAGTTGTTCGATAGGATTATTGCTAAA 602
|||||||||||||||||||||||||| || || ||||||||||| |||||||| || |||
Sbjct 424 GTGCATTTGGTTATGGAGCTTTGCGCGGGAGGTGAGTTGTTCGACAGGATTATCGC-AAA 482
Query 603 -GGACATTACTCGGAGAGAGCAGCTGCTTCGTTGCTAAGAACGATTGTTCAGATTGTGCA 661
|||||||| ||||||||||| || || ||||| ||| | |||||||| |||||| | ||
Sbjct 483 GGGACATTATTCGGAGAGAGCTGCAGCCTCGTTACTACGGACGATTGTGCAGATTATCCA 542
Query 662 TACTTGCCATTCCATGGGGGTGATTCACAGGGATTTGAAACCAGAGAACTTTCTCTTGCT 721
||||||||||||||||||||| || |||||||| ||||| || ||||||||| | |||||
Sbjct 543 TACTTGCCATTCCATGGGGGTTATCCACAGGGACTTGAAGCCTGAGAACTTTTTGTTGCT 602
Query 722 CAACAAAGATGAGAATTCTCCTCTCAAAGCTACTGACTTTGGGTTGTCGGTTTTTTACAA 781
| ||| ||||||||||||||||| ||||| || ||||| ||||| || || || |||||
Sbjct 603 TAGCAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTGTTCTACAA 662
Query 782 GCCAGGAGAGGTGTTCAAGGATATTGTGGGGAGTGCTTATTACATCGCACCAGAGGTTTT 841
||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||
Sbjct 663 ACCAGGAGAGGTGTTCAAAGACATTGTGGGAAGTGCTTATTACATTGCACCAGAGGTGTT 722
Query 842 AAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCCT 901
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 723 GAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTGTATATCCT 782
Query 902 CTTATGTGGTGTCCCACCATTCTGGGCTGAGTCGGAGAACGGGATATTCAACGCCATCCT 961
| | |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 783 CCTGTGTGGTGTTCCACCTTTTTGGGCTGAGTCAGAGAATGGGATTTTCAATGCCATCCT 842
Query 962 AAGGGGACATGTTGATTTCTCAAGTGATCCATGGCCA-TCTATCTCGCCTCAGGCGAAGG 1020
||| ||||| |||||||| ||||| |||||||||||| || ||||| || ||||| || |
Sbjct 843 AAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTC-ATCTCACCACAGGCAAAAG 901
Query 1021 ATCTTGTTAAGAAGATGCTCAACTCTGATCCCAAGCAAAGATTAACTGCTGCCCAAGTTC 1080
| || |||| ||||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct 902 ACCTCGTTAGGAAGATGCTCAACTCTGATCCAAAACAAAGATTAACCGCTGCTCAAGTTC 961
Query 1081 TCAACCATCCATGGATCAAGGAGGATGGAGAGGCACCAGATGTTCCTCTTGACAATGCGG 1140
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 962 TCAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGACAATGCAG 1021
Query 1141 TGATGTCAAGGCTCAAGCAGTTCAAAGCAATGAACAA-TTTCAAGAAAGTTGCATTACGG 1199
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1022 TGATGTCTAGGCTCAAGCAGTTCAAAGCAATGAACAACTTT-AAGAAAGTTGCTTTACGG 1080
Query 1200 GTGATAGCAGGCTGCTTATCAGAGGAAGAGATCATGGGGTTGAAGGAGATGTTTAAAGGT 1259
|||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 1081 GTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAAGAGATGTTCAAAGGA 1140
Query 1260 ATGGACACTGATAGCAGTGGAACAATTACACTCGAGGAGTTAAGACAGGGACTTGCCAAG 1319
||||||||||| | ||||||||| || || || ||||| |||||||||||||||| |||
Sbjct 1141 ATGGACACTGACAACAGTGGAACCATAACTCTTGAGGAACTAAGACAGGGACTTGCTAAG 1200
Query 1320 CAAGGTACAAGGTTGTCAGAATATGAAGTTCAGCAGCTAATGGAAGCTGCTGATGCTGAT 1379
|||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 1201 CAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAACTAATGGAAGCTGCTGATGCGGAC 1260
Query 1380 GGTAATGGAACAATAGACTATGGTGAGTTTATCGCAGCAACAATGCACATCAACAGACTT 1439
||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct 1261 GGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAACAGGCTC 1320
Query 1440 GACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGATAT 1499
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGATAT 1380
Query 1500 ATCACAATGGAAGAGCTGGAGCAAGCCCTCCGGGAGTTTGGCATGAATGATGGCAGAGAC 1559
||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1381 ATCACAACGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGCAGAGAC 1440
Query 1560 ATTAAGGAGATCATTTCCGAGGTTGATGGAGACAATGATGGTCGGATAAACTATGATGAA 1619
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1441 ATTAAGGAAATCATTTCTGAGGTTGATGGAGACAATGATGGGCGGATAAACTACGAGGAA 1500
Query 1620 TTTGTGGCAATGATGAGAAAAGGAAACCCGGATCC-AATCCCAAAAAAGCGGCGTGAACT 1678
|||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||||
Sbjct 1501 TTTGTGGCGATGATGAGAAAAGGAAACCCAGATCCTAATCCTAAGAA-GCGGCGTGAACT 1559
Query 1679 TTCATTCAAATGA 1691
||||||||||||
Sbjct 1560 ATCATTCAAATGA 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96083843130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5